SMTL ID : 1em6.1

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-526,423

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NBG: N-acetyl-beta-D-glucopyranosylamine(Non-covalent)

NBG.1: 14 residues within 4Å: Chain A: G.136, L.137, L.140, N.285, D.340, H.378, T.379, V.456, N.485, Y.574, E.673, A.674, S.675, G.676 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.379 Hydrogen bonds: A:N.285, A:N.285, A:H.378, A:H.378, A:N.485, A:E.673, A:S.675, A:S.675, A:G.676 Water bridges: A:L.137, A:N.285, A:K.575, A:E.673, A:E.673 NBG.4: 14 residues within 4Å: Chain B: G.136, L.137, L.140, N.285, D.340, H.378, T.379, V.456, N.485, Y.574, E.673, A.674, S.675, G.676 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.137, B:H.378, B:T.379 Hydrogen bonds: B:N.285, B:N.285, B:H.378, B:H.378, B:N.485, B:E.673, B:S.675, B:S.675, B:G.676 Water bridges: B:L.137, B:N.285, B:K.575, B:A.674, B:A.674

1 x CP4: BIS[5-CHLORO-1H-INDOL-2-YL-CARBONYL-AMINOETHYL]-ETHYLENE GLYCOL(Non-covalent)

CP4.2: 23 residues within 4Å: Chain A: F.38, T.39, V.41, R.61, L.64, V.65, W.68, P.189, W.190, E.191, K.192, P.230 Chain B: T.39, V.41, R.61, L.64, V.65, W.68, P.189, W.190, E.191, K.192, P.230 21 PLIP interactions: 12 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:V.41, A:W.68, A:K.192, A:P.230, B:V.41, B:W.68, B:K.192, B:K.192, B:P.230 Hydrogen bonds: A:T.39, B:T.39 Water bridges: A:R.61, A:R.61, A:R.61, A:R.61, A:R.61, A:R.61, B:R.61, B:R.61 pi-Cation interactions: A:R.61, B:R.61

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.3: 17 residues within 4Å: Chain A: Y.91, G.135, G.136, R.139, W.492, V.568, K.569, K.575, Y.649, R.650, V.651, A.654, E.673, G.676, T.677, G.678, K.681 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.91, A:R.139, A:Y.649, A:K.681 Hydrogen bonds: A:V.568, A:T.677, A:T.677, A:G.678 Water bridges: A:G.136, A:K.569, A:K.575, A:G.676, A:G.676, A:N.679, A:N.679 Salt bridges: A:K.569, A:K.575 PLP.5: 16 residues within 4Å: Chain B: Y.91, G.135, G.136, W.492, V.568, K.569, K.575, Y.649, R.650, V.651, A.654, E.673, G.676, T.677, G.678, K.681 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.91, B:Y.649, B:K.681 Hydrogen bonds: B:V.568, B:T.677, B:T.677, B:G.678 Water bridges: B:Y.91, B:G.136, B:K.569, B:K.575, B:N.679, B:N.679 Salt bridges: B:K.569, B:K.575

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 5 residues within 4Å: Chain A: V.41, V.46 Chain B: W.68, Q.72, R.194 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.68, B:W.68, B:Q.72, A:V.41 Hydrogen bonds: B:R.194, A:V.41 Water bridges: B:R.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rath, V.L. et al., Human liver glycogen phosphorylase inhibitors bind at a new allosteric site. Chem.Biol. (2000)

Release Date

2000-11-01

Peptides

LIVER GLYCOGEN PHOSPHORYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LIVER GLYCOGEN PHOSPHORYLASE

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