SMTL ID : 1eo8.1

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 6 residues within 4Å: Chain A: N.165, T.167 Chain I: S.219, R.220, P.221, W.222 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:W.222 NAG-NAG-MAN.5: 6 residues within 4Å: Chain A: S.219, R.220, P.221, W.222 Chain E: N.165, T.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.222 NAG-NAG-MAN.9: 6 residues within 4Å: Chain E: S.219, R.220, P.221, W.222 Chain I: N.165, T.167 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.222

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: S.45, N.285, V.297, N.298 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain E: S.45, N.285, V.297, N.298 Chain F: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain I: S.45, N.285, V.297, N.298 Chain J: E.69 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: Q.80, N.81, E.119, F.120, I.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.81, A:N.81 NAG.4: 2 residues within 4Å: Chain B: E.150, N.154 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.150, B:N.154 NAG.7: 5 residues within 4Å: Chain E: Q.80, N.81, E.119, F.120, I.121 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.81, E:N.81 NAG.8: 2 residues within 4Å: Chain F: E.150, N.154 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.150, F:N.154 NAG.11: 5 residues within 4Å: Chain I: Q.80, N.81, E.119, F.120, I.121 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:N.81, I:N.81 NAG.12: 2 residues within 4Å: Chain J: E.150, N.154 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:E.150, J:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fleury, D. et al., Structural evidence for recognition of a single epitope by two distinct antibodies. Proteins (2000)

Release Date

2000-04-12

Peptides

HEMAGGLUTININ (HA1 CHAIN): AEI
HEMAGGLUTININ (HA2 CHAIN): BFJ
ANTIBODY (LIGHT CHAIN): CGK
ANTIBODY (HEAVY CHAIN): DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
L

G
L

K
L

D
H

H
H

L
H

HEMAGGLUTININ (HA1 CHAIN)

HEMAGGLUTININ (HA2 CHAIN)

ANTIBODY (LIGHT CHAIN)

ANTIBODY (HEAVY CHAIN)

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