SMTL ID : 3ztj.1

Structure of influenza A neutralizing antibody selected from cultures of single human plasma cells in complex with human H3 Influenza haemagglutinin.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.41 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: V.20, N.22, T.37, N.38, A.39 Chain G: N.56, Y.57 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.56 NAG-NAG-BMA.3: 6 residues within 4Å: Chain A: N.165, T.167, V.242 Chain E: S.219, P.221, W.222 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:W.222 Hydrophobic interactions: A:V.242 NAG-NAG-BMA.8: 6 residues within 4Å: Chain A: S.219, R.220, P.221, W.222 Chain C: N.165, T.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.222 NAG-NAG-BMA.12: 5 residues within 4Å: Chain C: S.219, P.221, W.222 Chain E: N.165, T.167 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.222

10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.81, E.119, F.120, I.121 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain A: S.45, N.285, N.298 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain B: A.147, E.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain C: T.37, N.38 Chain I: N.56, Y.57 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.56 NAG-NAG.7: 6 residues within 4Å: Chain C: N.81, E.119, F.120, I.121, T.122, R.150 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.122, C:T.122, C:T.122 NAG-NAG.9: 4 residues within 4Å: Chain C: S.45, N.285, V.297, K.299 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain E: N.22, N.38 Chain K: D.54, N.56, Y.57 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.56 NAG-NAG.11: 5 residues within 4Å: Chain E: Q.80, N.81, E.119, F.120, I.121 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 5 residues within 4Å: Chain E: S.45, N.285, N.296, V.297 Chain F: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 5 residues within 4Å: Chain F: A.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 3 residues within 4Å: Chain D: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:T.156 Hydrogen bonds: D:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corti, D. et al., A Neutralizing Antibody Selected from Plasma Cells that Binds to Group 1 and Group 2 Influenza a Hemagglutinins. Science (2011)

Release Date

2011-08-10

Peptides

HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF
FI6V3 ANTIBODY HEAVY CHAIN: GIK
FI6V3 ANTIBODY LIGHT CHAIN: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

K
K

H
H

J
J

L
L

HEMAGGLUTININ HA1 CHAIN

HEMAGGLUTININ HA2 CHAIN

FI6V3 ANTIBODY HEAVY CHAIN

FI6V3 ANTIBODY LIGHT CHAIN

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