SMTL ID : 1eub.1

SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN COLLAGENASE-3 (MMP-13) COMPLEXED TO A POTENT NON-PEPTIDIC SULFONAMIDE INHIBITOR

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: G.65, H.69, P.74, H.84, H.97 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.69, A:H.84, A:H.97 ZN.2: 5 residues within 4Å: Chain A: H.119, H.123, H.129, M.137 Ligands: HAV.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.119, A:H.123, A:H.129, A:M.137, HAV.5

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.59, P.90, N.91, Y.92, G.93, D.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.59, A:N.91, A:G.93, A:D.95 CA.4: 7 residues within 4Å: Chain A: D.76, G.77, P.78, S.79, L.81, D.99, E.102 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.76, A:G.77, A:S.79, A:L.81, A:E.102

1 x HAV: HYDROXYAMINOVALINE(Non-covalent)

HAV.5: 14 residues within 4Å: Chain A: G.80, L.81, L.82, A.83, H.84, H.119, E.120, H.123, H.129, M.137, P.139 Ligands: ZN.2, 3MP.6, MSB.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.81 Hydrogen bonds: A:L.82, A:E.120

1 x 3MP: 3-METHYLPYRIDINE(Non-covalent)

3MP.6: 7 residues within 4Å: Chain A: G.80, L.81, L.82, F.138, P.139 Ligands: HAV.5, MSB.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.139

1 x MSB: 1-METHYLOXY-4-SULFONE-BENZENE(Non-covalent)

MSB.7: 13 residues within 4Å: Chain A: L.82, A.83, L.115, V.116, H.119, E.120, L.136, F.138, P.139, I.140, Y.141 Ligands: HAV.5, 3MP.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.119, A:Y.141 Hydrogen bonds: A:H.119 pi-Cation interactions: A:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Solution structure of the catalytic domain of human collagenase-3 (MMP-13) complexed to a potent non-peptidic sulfonamide inhibitor: binding comparison with stromelysin-1 and collagenase-1. J.Mol.Biol. (2000)

Release Date

2001-04-14

Peptides

COLLAGENASE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

COLLAGENASE 3

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