- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: T.23, P.24, D.25, D.100, E.102
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.25, A:E.102
CA.4: 7 residues within 4Å:- Chain A: D.76, G.77, P.78, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.76, A:G.77, A:L.81, A:D.99, A:E.102
CA.5: 5 residues within 4Å:- Chain A: D.59, N.91, Y.92, G.93, D.95
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.59, A:G.93, A:D.95, H2O.1, H2O.1
CA.9: 4 residues within 4Å:- Chain B: D.25, D.100, E.102
- Chain C: D.55
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.55, H2O.9
CA.10: 6 residues within 4Å:- Chain B: D.76, G.77, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.76, B:G.77, B:L.81, B:D.99, B:E.102
CA.11: 6 residues within 4Å:- Chain B: A.58, D.59, N.91, Y.92, G.93, D.95
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.59, B:N.91, B:G.93, B:D.95, H2O.6
CA.14: 5 residues within 4Å:- Chain C: T.23, P.24, D.25, D.100, E.102
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.25, C:E.102
CA.15: 7 residues within 4Å:- Chain C: D.76, G.77, P.78, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.76, C:G.77, C:L.81, C:D.99, C:E.102
CA.16: 5 residues within 4Å:- Chain C: D.59, N.91, Y.92, G.93, D.95
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.59, C:G.93, C:D.95, H2O.10, H2O.11
CA.20: 4 residues within 4Å:- Chain A: D.55
- Chain D: D.25, D.100, E.102
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.55, H2O.18
CA.21: 6 residues within 4Å:- Chain D: D.76, G.77, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.76, D:G.77, D:L.81, D:D.99, D:E.102
CA.22: 6 residues within 4Å:- Chain D: A.58, D.59, N.91, Y.92, G.93, D.95
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.59, D:N.91, D:G.93, D:D.95, H2O.16
- 2 x 518: N-[4-(5-{[(1S)-1-cyclohexyl-2-(methylamino)-2-oxoethyl]carbamoyl}furan-2-yl)phenyl]-1-benzofuran-2-carboxamide(Non-covalent)
518.6: 19 residues within 4Å:- Chain A: G.80, L.81, L.82, A.83, Y.111, L.115, V.116, H.119, E.120, G.134, L.136, F.138, P.139, I.140, Y.141, T.142, T.144, F.149, P.152
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:H.119, A:I.140, A:T.144, A:F.149, A:F.149, A:P.152
- Hydrogen bonds: A:G.80, A:G.80, A:L.82, A:A.83, A:L.136, A:P.139, A:Y.141, A:T.142
- pi-Stacking: A:H.119
518.17: 19 residues within 4Å:- Chain C: G.80, L.81, L.82, A.83, Y.111, L.115, V.116, H.119, E.120, G.134, L.136, F.138, P.139, I.140, Y.141, T.142, T.144, F.149, P.152
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:H.119, C:I.140, C:T.144, C:F.149, C:F.149, C:P.152
- Hydrogen bonds: C:G.80, C:G.80, C:L.82, C:A.83, C:L.136, C:P.139, C:Y.141, C:T.142
- pi-Stacking: C:H.119
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heim-Riether, A. et al., Improving potency and selectivity of a new class of non-Zn-chelating MMP-13 inhibitors. Bioorg.Med.Chem.Lett. (2009)
- Release Date
- 2009-09-01
- Peptides
- Collagenase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)
- 2 x 518: N-[4-(5-{[(1S)-1-cyclohexyl-2-(methylamino)-2-oxoethyl]carbamoyl}furan-2-yl)phenyl]-1-benzofuran-2-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heim-Riether, A. et al., Improving potency and selectivity of a new class of non-Zn-chelating MMP-13 inhibitors. Bioorg.Med.Chem.Lett. (2009)
- Release Date
- 2009-09-01
- Peptides
- Collagenase 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B