SMTL ID : 1f7n.1 (2 other biounits)

CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 8 residues within 4Å: Chain A: D.64 Chain B: D.64 Chain C: D.64 Ligands: MG.2, MG.4, MG.5, MG.7, MG.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.64, C:D.64, B:D.64, H2O.1, H2O.3, H2O.5 MG.2: 5 residues within 4Å: Ligands: MG.1, MG.4, MG.5, MG.7, MG.8 No protein-ligand interaction detected (PLIP) MG.4: 8 residues within 4Å: Chain A: D.64 Chain B: D.64 Chain C: D.64 Ligands: MG.1, MG.2, MG.5, MG.7, MG.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.64, C:D.64, B:D.64, H2O.1, H2O.3, H2O.5 MG.5: 5 residues within 4Å: Ligands: MG.1, MG.2, MG.4, MG.7, MG.8 No protein-ligand interaction detected (PLIP) MG.7: 8 residues within 4Å: Chain A: D.64 Chain B: D.64 Chain C: D.64 Ligands: MG.1, MG.2, MG.4, MG.5, MG.8 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.64, C:D.64, B:D.64, H2O.1, H2O.3, H2O.5 MG.8: 5 residues within 4Å: Ligands: MG.1, MG.2, MG.4, MG.5, MG.7 No protein-ligand interaction detected (PLIP)

3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.3: 12 residues within 4Å: Chain A: L.66, G.67, G.68, V.69, I.70, D.71, Y.74, I.78, G.79, I.81 Chain C: K.55, S.56 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:I.70, A:Y.74 Hydrogen bonds: A:G.68, A:D.71, A:G.79, A:G.79, C:S.56, C:S.56, C:S.56 Salt bridges: C:K.55 UMP.6: 12 residues within 4Å: Chain A: K.55, S.56 Chain B: L.66, G.67, G.68, V.69, I.70, D.71, Y.74, I.78, G.79, I.81 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:S.56, A:S.56, A:S.56, B:G.68, B:D.71, B:G.79, B:G.79 Salt bridges: A:K.55 Hydrophobic interactions: B:I.70, B:Y.74 UMP.9: 12 residues within 4Å: Chain B: K.55, S.56 Chain C: L.66, G.67, G.68, V.69, I.70, D.71, Y.74, I.78, G.79, I.81 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:I.70, C:Y.74 Hydrogen bonds: C:G.68, C:D.71, C:G.79, C:G.79, B:S.56, B:S.56, B:S.56 Salt bridges: B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prasad, G.S. et al., Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-09-06

Peptides

POL POLYPROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

POL POLYPROTEIN

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