SMTL ID : 1f8r.2 (1 other biounit)

CRYSTAL STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA COMPLEXED WITH CITRATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: R.170, T.171, N.172, Y.175 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.171 NAG-NAG-FUC.2: 4 residues within 4Å: Chain B: R.170, T.171, N.172, Y.175 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.110, N.359, H.360, N.361 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.359, A:N.361, A:N.361 NAG.6: 4 residues within 4Å: Chain B: N.110, N.359, H.360, N.361 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.361

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 8 residues within 4Å: Chain A: R.90, N.208, H.223, F.227, R.322, Y.356, Y.372, I.430 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.208, A:H.223, A:Y.356, A:Y.372 Water bridges: A:R.90, A:R.90, A:R.90, A:R.322, A:R.322 Salt bridges: A:R.90, A:R.90, A:H.223, A:R.322 CIT.7: 9 residues within 4Å: Chain B: R.90, N.208, H.223, F.227, R.322, Y.356, Y.372, I.430 Ligands: FAD.8 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:R.90, B:H.223, B:Y.356, B:Y.372 Water bridges: B:R.90, B:R.322 Salt bridges: B:R.90, B:R.90, B:H.223, B:R.322

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 35 residues within 4Å: Chain A: V.39, G.40, G.42, M.43, A.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, L.91, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:W.420, A:I.430, A:I.430 Hydrogen bonds: A:A.41, A:M.43, A:A.44, A:A.64, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:E.457, A:I.466 Water bridges: A:G.42, A:G.45, A:S.65, A:S.65, A:G.70, A:R.71, A:R.71, A:V.72, A:V.72, A:Q.260, A:Q.260, A:Q.260, A:T.295, A:T.295, A:Y.372, A:D.467, A:T.469 Salt bridges: A:R.71, A:R.71 FAD.8: 38 residues within 4Å: Chain B: V.39, G.40, A.41, G.42, M.43, A.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, L.91, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, I.302, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: CIT.7 34 PLIP interactions: 34 interactions with chain B Hydrophobic interactions: B:W.420, B:I.430, B:I.430 Hydrogen bonds: B:A.41, B:M.43, B:A.44, B:A.64, B:R.71, B:V.72, B:M.89, B:R.90, B:R.90, B:V.261, B:V.261, B:E.457, B:E.457, B:I.466 Water bridges: B:G.42, B:G.45, B:S.65, B:S.65, B:G.70, B:R.71, B:R.71, B:Q.260, B:T.295, B:T.295, B:A.298, B:Y.372, B:D.467, B:T.469 Salt bridges: B:R.71, B:R.71 pi-Stacking: B:W.465

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pawelek, P.D. et al., The structure of L-amino acid oxidase reveals the substrate trajectory into an enantiomerically conserved active site. EMBO J. (2000)

Release Date

2000-08-24

Peptides

L-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

L-AMINO ACID OXIDASE

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