SMTL ID : 1f8s.3 (3 other biounits)

CRYSTAL STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA, COMPLEXED WITH THREE MOLECULES OF O-AMINOBENZOATE.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: T.171, N.172, Y.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.172, A:S.174, A:S.174 NAG.6: 2 residues within 4Å: Chain B: N.172, S.174 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.174, B:S.174 Water bridges: B:N.172, B:N.172

6 x BE2: 2-AMINOBENZOIC ACID(Non-covalent)

BE2.2: 7 residues within 4Å: Chain A: R.90, Y.372, I.430, G.464, W.465 Ligands: BE2.3, FAD.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.430, A:W.465 Hydrogen bonds: A:Y.372, A:Y.372, A:G.464 Water bridges: A:M.89 Salt bridges: A:R.90 BE2.3: 9 residues within 4Å: Chain A: R.90, L.207, N.208, E.209, H.223, R.322, I.374 Ligands: BE2.2, BE2.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.208, A:I.374 Hydrogen bonds: A:E.209, A:E.209 Salt bridges: A:R.90, A:H.223 pi-Stacking: A:H.223 BE2.4: 8 residues within 4Å: Chain A: Y.157, L.207, E.209, H.223, D.224, F.227, A.228 Ligands: BE2.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.207, A:D.224 Hydrogen bonds: A:D.224 Water bridges: A:D.224, A:D.224 pi-Stacking: A:Y.157 BE2.7: 7 residues within 4Å: Chain B: R.90, Y.372, I.430, G.464, W.465 Ligands: BE2.8, FAD.10 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.430, B:W.465 Hydrogen bonds: B:Y.372, B:Y.372, B:G.464 Water bridges: B:M.89 Salt bridges: B:R.90 BE2.8: 9 residues within 4Å: Chain B: R.90, L.207, N.208, E.209, H.223, R.322, I.374 Ligands: BE2.7, BE2.9 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:N.208, B:I.374 Hydrogen bonds: B:E.209, B:E.209 Water bridges: B:R.90, B:R.90 Salt bridges: B:R.90, B:H.223 pi-Stacking: B:H.223 BE2.9: 8 residues within 4Å: Chain B: Y.157, L.207, E.209, H.223, D.224, F.227, A.228 Ligands: BE2.8 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:D.224 Hydrogen bonds: B:D.224, B:D.224 pi-Stacking: B:Y.157

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 38 residues within 4Å: Chain A: V.39, G.40, A.41, G.42, M.43, A.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, L.91, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, I.302, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: BE2.2 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:W.420, A:I.430, A:I.430 Hydrogen bonds: A:A.41, A:M.43, A:A.44, A:A.64, A:R.71, A:M.89, A:R.90, A:R.90, A:V.261, A:V.261, A:E.457, A:E.457, A:E.457, A:I.466 Water bridges: A:G.42, A:G.45, A:S.65, A:R.71, A:R.71, A:V.72, A:V.72, A:Q.260, A:Q.260, A:T.295, A:T.295, A:Y.372, A:D.467, A:T.469 Salt bridges: A:R.71, A:R.71 pi-Stacking: A:W.465 FAD.10: 38 residues within 4Å: Chain B: V.39, G.40, A.41, G.42, M.43, A.44, L.62, E.63, A.64, G.69, G.70, R.71, V.72, G.87, P.88, M.89, R.90, L.91, A.259, Q.260, V.261, C.293, T.294, T.295, A.298, I.302, Y.372, W.420, Y.425, G.429, I.430, G.456, E.457, G.464, W.465, I.466, T.469 Ligands: BE2.7 37 PLIP interactions: 37 interactions with chain B Hydrophobic interactions: B:W.420, B:I.430, B:I.430 Hydrogen bonds: B:A.41, B:M.43, B:A.44, B:A.64, B:R.71, B:M.89, B:R.90, B:R.90, B:V.261, B:V.261, B:E.457, B:E.457, B:I.466 Water bridges: B:G.42, B:G.45, B:E.63, B:S.65, B:G.70, B:R.71, B:R.71, B:V.72, B:V.72, B:Q.260, B:Q.260, B:Q.260, B:Q.260, B:T.295, B:T.295, B:Y.372, B:D.467, B:T.469 Salt bridges: B:R.71, B:R.71 pi-Stacking: B:W.465

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pawelek, P.D. et al., The structure of L-amino acid oxidase reveals the substrate trajectory into an enantiomerically conserved active site. EMBO J. (2000)

Release Date

2000-08-24

Peptides

L-AMINO ACID OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

L-AMINO ACID OXIDASE

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