SMTL ID : 1fbh.1

CRYSTALLOGRAPHIC STUDIES OF THE CATALYTIC MECHANISM OF THE NEUTRAL FORM OF FRUCTOSE-1,6-BISPHOSPHATASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x AFP: 1,6-di-O-phosphono-alpha-D-fructofuranose(Non-covalent)

AFP.1: 19 residues within 4Å: Chain A: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, N.267, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: FBP.2 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.122, A:S.123, A:S.124, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274, A:R.276 Water bridges: A:V.249, B:R.243 Salt bridges: A:K.274, A:K.274, B:R.243 AFP.3: 18 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Ligands: FBP.4 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:S.124, B:N.212, B:Y.215, B:Y.244, B:M.248, B:Y.264, B:K.274, B:R.276 Salt bridges: B:K.274, B:K.274, A:R.243 AFP.5: 19 residues within 4Å: Chain C: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, N.267, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: FBP.6 17 PLIP interactions: 15 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.122, C:S.123, C:S.124, C:N.212, C:Y.215, C:Y.244, C:Y.244, C:Y.244, C:M.248, C:Y.264, C:K.274, C:R.276 Water bridges: C:V.249, D:R.243 Salt bridges: C:K.274, C:K.274, D:R.243 AFP.7: 18 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Ligands: FBP.8 15 PLIP interactions: 14 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:S.124, D:N.212, D:Y.215, D:Y.244, D:M.248, D:Y.264, D:K.274, D:R.276 Water bridges: D:E.280 Salt bridges: D:K.274, D:K.274, C:R.243

4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.2: 20 residues within 4Å: Chain A: D.118, D.121, G.122, S.123, S.124, N.125, N.212, Y.215, Y.244, G.246, S.247, M.248, V.249, F.262, Y.264, K.274, R.276, E.280 Chain B: R.243 Ligands: AFP.1 19 PLIP interactions: 17 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.121, A:D.121, A:G.122, A:S.123, A:S.124, A:N.125, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274 Water bridges: A:V.249, B:R.243 Salt bridges: A:K.274, A:K.274, A:R.276, B:R.243 FBP.4: 19 residues within 4Å: Chain A: R.243 Chain B: E.97, D.121, G.122, S.124, N.125, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Ligands: AFP.3 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.124, B:N.212, B:Y.215, B:M.248, B:Y.264, B:K.274, B:R.276 Water bridges: B:Y.244, B:G.246 Salt bridges: B:K.274, B:K.274, A:R.243 FBP.6: 20 residues within 4Å: Chain C: D.118, D.121, G.122, S.123, S.124, N.125, N.212, Y.215, Y.244, G.246, S.247, M.248, V.249, F.262, Y.264, K.274, R.276, E.280 Chain D: R.243 Ligands: AFP.5 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:S.124, C:N.125, C:N.212, C:Y.215, C:Y.244, C:Y.244, C:M.248, C:Y.264, C:K.274 Water bridges: C:V.249, D:R.243 Salt bridges: C:K.274, C:K.274, C:R.276, D:R.243 FBP.8: 19 residues within 4Å: Chain C: R.243 Chain D: E.97, D.121, G.122, S.124, N.125, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, R.276, E.280 Ligands: AFP.7 15 PLIP interactions: 14 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.124, D:N.212, D:Y.215, D:M.248, D:Y.264, D:K.274, D:R.276 Water bridges: D:Y.244, D:G.246, D:E.280 Salt bridges: D:K.274, D:K.274, C:R.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Crystallographic studies of the catalytic mechanism of the neutral form of fructose-1,6-bisphosphatase. Biochemistry (1993)

Release Date

1993-10-31

Peptides

FRUCTOSE 1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE 1,6-BISPHOSPHATASE

Related Entries With Identical Sequence