SMTL ID : 1fch.5 (4 other biounits)

CRYSTAL STRUCTURE OF THE PTS1 COMPLEXED TO THE TPR REGION OF HUMAN PEX5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x TYR- GLN- SER- LYS- LEU: PTS1-CONTAINING PEPTIDE(Non-covalent)

TYR-GLN-SER-LYS-LEU.1: 21 residues within 4Å: Chain A: E.112, V.140, T.143, N.144, S.146, N.228, N.255, K.256, A.259, T.260, A.262, N.263, Y.274, R.286, N.290, I.293, N.297, L.338 Chain B: D.238, T.241, A.242 26 PLIP interactions: 4 interactions with chain B, 22 interactions with chain A Hydrophobic interactions: B:D.238, A:V.140, A:T.143, A:N.144, A:A.259, A:L.338 Hydrogen bonds: B:D.238, B:D.238, B:A.242, A:N.144, A:N.144, A:N.144, A:N.255, A:N.263, A:N.263, A:Y.274, A:Y.274, A:N.290, A:N.290, A:N.297 Water bridges: A:T.143, A:S.146, A:N.263, A:R.286 Salt bridges: A:K.256, A:R.286 TYR-GLN-SER-LYS-LEU.2: 18 residues within 4Å: Chain B: E.112, V.140, T.143, N.144, N.228, N.255, K.256, A.259, T.260, A.262, Y.274, R.286, Y.289, N.290, I.293, N.331, T.335, L.338 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:V.140, B:T.143, B:N.228, B:A.259, B:L.338 Hydrogen bonds: B:N.144, B:N.144, B:N.144, B:N.255, B:Y.274, B:N.290, B:N.290, B:T.335 Water bridges: B:E.145, B:N.263, B:N.263, B:Y.284, B:Y.284, B:R.286, B:R.286, B:Y.289, B:Y.289, B:N.331, B:N.331 Salt bridges: B:K.256, B:R.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gatto Jr., G.J. et al., Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5. Nat.Struct.Biol. (2000)

Release Date

2000-12-06

Peptides

PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR

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