SMTL ID : 1fe8.1 (3 other biounits)

CRYSTAL STRUCTURE OF THE VON WILLEBRAND FACTOR A3 DOMAIN IN COMPLEX WITH A FAB FRAGMENT OF IGG RU5 THAT INHIBITS COLLAGEN BINDING

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 6 residues within 4Å: Chain A: K.73, A.74 Chain B: N.56, T.57, T.58 Ligands: NAG.2 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:K.73 Water bridges: A:A.74 Hydrogen bonds: B:N.56, B:T.57, B:T.57

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG.2: 2 residues within 4Å: Ligands: NAG-FUC.1, NAG-FUC.1 No protein-ligand interaction detected (PLIP)

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.3: 3 residues within 4Å: Chain C: K.142, D.143, W.163 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.142, C:D.143 Water bridges: C:I.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Romijn, R.A. et al., Identification of the collagen-binding site of the von Willebrand factor A3-domain. J.Biol.Chem. (2001)

Release Date

2001-04-04

Peptides

VON WILLEBRAND FACTOR: A
IMMUNOGLOBULIN IGG RU5: B
IMMUNOGLOBULIN IGG RU5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

VON WILLEBRAND FACTOR

IMMUNOGLOBULIN IGG RU5

IMMUNOGLOBULIN IGG RU5

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