SMTL ID : 2adf.1

Crystal Structure and Paratope Determination of 82D6A3, an Antithrombotic Antibody Directed Against the von Willebrand factor A3-Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 3 residues within 4Å: Chain A: F.145, F.189, K.192 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.145, A:F.189, A:K.192

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain B: S.191 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.191 SO4.4: 2 residues within 4Å: Chain C: Q.27, D.28 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.28 Water bridges: C:D.28, C:D.28, C:D.28, C:D.28

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: T.93, Q.110, G.111, T.113 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.93, B:Q.110 Water bridges: B:G.111, B:T.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Staelens, S. et al., Paratope determination of the antithrombotic antibody 82D6A3 based on the crystal structure of its complex with the von Willebrand factor A3-domain. J.Biol.Chem. (2006)

Release Date

2005-12-06

Peptides

Von Willebrand factor: A
82D6A3 IgG: B
82D6A3 IgG: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Von Willebrand factor

82D6A3 IgG

82D6A3 IgG

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