SMTL ID : 1fpl.1

FRUCTOSE-1,6-BISPHOSPHATASE (D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE) COMPLEXED WITH AMP, 2,5-ANHYDRO-D-GLUCITOL-1,6-BISPHOSPHATE AND THALLIUM IONS (10 MM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

12 x TL: THALLIUM (I) ION(Non-covalent)

TL.1: 7 residues within 4Å: Chain A: E.97, D.118, D.121, E.280 Ligands: TL.2, TL.3, AHG.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.97, A:D.118, A:D.121, A:E.280 TL.2: 6 residues within 4Å: Chain A: E.97, E.98, D.118, L.120, S.123 Ligands: TL.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:E.98, A:L.120 TL.3: 5 residues within 4Å: Chain A: E.97, R.276, E.280 Ligands: TL.1, AHG.5 No protein-ligand interaction detected (PLIP) TL.6: 7 residues within 4Å: Chain B: E.97, D.118, D.121, E.280 Ligands: TL.7, TL.8, AHG.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.97, B:E.97, B:D.118, B:D.121, B:E.280 TL.7: 5 residues within 4Å: Chain B: E.97, E.98, D.118, L.120 Ligands: TL.6 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.118, B:L.120 TL.8: 5 residues within 4Å: Chain B: E.97, R.276, E.280 Ligands: TL.6, AHG.10 No protein-ligand interaction detected (PLIP) TL.11: 7 residues within 4Å: Chain C: E.97, D.118, D.121, E.280 Ligands: TL.12, TL.13, AHG.15 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.97, C:D.118, C:D.121, C:E.280 TL.12: 6 residues within 4Å: Chain C: E.97, E.98, D.118, L.120, S.123 Ligands: TL.11 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:E.98, C:L.120 TL.13: 5 residues within 4Å: Chain C: E.97, R.276, E.280 Ligands: TL.11, AHG.15 No protein-ligand interaction detected (PLIP) TL.16: 7 residues within 4Å: Chain D: E.97, D.118, D.121, E.280 Ligands: TL.17, TL.18, AHG.20 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.97, D:E.97, D:D.118, D:D.121, D:E.280 TL.17: 5 residues within 4Å: Chain D: E.97, E.98, D.118, L.120 Ligands: TL.16 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.118, D:L.120 TL.18: 5 residues within 4Å: Chain D: E.97, R.276, E.280 Ligands: TL.16, AHG.20 No protein-ligand interaction detected (PLIP)

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 15 residues within 4Å: Chain A: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140 Water bridges: A:R.140, A:R.140 Salt bridges: A:K.112 AMP.9: 14 residues within 4Å: Chain B: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:T.31, B:Y.113, B:Y.113, B:R.140 Salt bridges: B:K.112 AMP.14: 15 residues within 4Å: Chain C: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:T.31, C:Y.113, C:Y.113, C:R.140 Water bridges: C:R.140, C:R.140 Salt bridges: C:K.112 AMP.19: 14 residues within 4Å: Chain D: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:T.31, D:Y.113, D:Y.113, D:R.140 Salt bridges: D:K.112

4 x AHG: 2,5-anhydro-1,6-di-O-phosphono-D-glucitol(Non-covalent)

AHG.5: 16 residues within 4Å: Chain A: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274 Chain B: R.243 Ligands: TL.1, TL.3 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.97, A:D.121, A:G.122, A:S.123, A:S.124, A:N.212, A:Y.215, A:Y.244, A:M.248, A:K.274 Water bridges: A:S.124, A:S.124, A:S.124, A:Y.215, A:Y.264, B:R.243, B:R.243 Salt bridges: A:K.274, A:K.274, B:R.243 AHG.10: 18 residues within 4Å: Chain A: R.243 Chain B: E.97, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275 Ligands: TL.6, TL.8 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:S.124, B:N.212, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Water bridges: B:Y.215, B:Y.264, A:R.243 Salt bridges: B:K.274, B:K.274, A:R.243 AHG.15: 16 residues within 4Å: Chain C: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274 Chain D: R.243 Ligands: TL.11, TL.13 20 PLIP interactions: 3 interactions with chain D, 17 interactions with chain C Water bridges: D:R.243, D:R.243, C:S.124, C:S.124, C:S.124, C:Y.215, C:Y.264 Salt bridges: D:R.243, C:K.274, C:K.274 Hydrogen bonds: C:E.97, C:D.121, C:G.122, C:S.123, C:S.124, C:N.212, C:Y.215, C:Y.244, C:M.248, C:K.274 AHG.20: 18 residues within 4Å: Chain C: R.243 Chain D: E.97, D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275 Ligands: TL.16, TL.18 16 PLIP interactions: 14 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:S.124, D:N.212, D:Y.244, D:Y.244, D:M.248, D:Y.264, D:K.274 Water bridges: D:Y.215, D:Y.264, C:R.243 Salt bridges: D:K.274, D:K.274, C:R.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Villeret, V. et al., Crystallographic evidence for the action of potassium, thallium, and lithium ions on fructose-1,6-bisphosphatase. Proc.Natl.Acad.Sci.USA (1995)

Release Date

1996-06-20

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE-1,6-BISPHOSPHATASE

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