SMTL ID : 1fqo.1

GLUCOSAMINE 6-PHOSPHATE DEAMINASE COMPLEXED WITH THE SUBSTRATE OF THE REVERSE REACTION FRUCTOSE 6-PHOSPHATE (OPEN FORM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

12 x F6R: FRUCTOSE -6-PHOSPHATE(Non-covalent)

F6R.1: 8 residues within 4Å: Chain A: S.151, S.152, R.158, I.159, K.160 Chain C: M.1, R.2, L.258 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:A.150, A:S.151, A:S.152, A:I.159, C:M.1 Water bridges: A:T.161, C:A.235, C:Y.254 Salt bridges: A:R.158, A:K.160 F6R.2: 13 residues within 4Å: Chain A: T.41, G.42, G.43, T.44, M.71, D.72, G.137, V.138, G.139, H.143, A.145, R.172, K.208 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.41, A:T.41, A:T.41, A:G.43, A:T.44, A:G.137, A:H.143, A:A.145, A:A.145 Water bridges: A:M.71, A:N.170, A:R.172, A:R.172, A:R.172 Salt bridges: A:R.172, A:K.208 F6R.3: 8 residues within 4Å: Chain B: A.150, S.151, S.152, R.158, I.159, K.160 Chain F: M.1, R.2 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:S.152 Water bridges: B:S.152, B:I.159, B:K.160, B:K.160, F:M.1 Salt bridges: B:R.158, B:K.160 F6R.4: 14 residues within 4Å: Chain B: P.40, T.41, G.42, G.43, T.44, D.72, G.137, V.138, G.139, H.143, A.145, F.146, R.172, K.208 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.41, B:T.41, B:G.43, B:T.44, B:G.137, B:H.143, B:H.143, B:A.145, B:A.145 Water bridges: B:T.41, B:D.72, B:R.172, B:R.172 Salt bridges: B:R.172, B:K.208 F6R.5: 8 residues within 4Å: Chain C: S.151, S.152, R.158, I.159, K.160 Chain E: M.1, R.2, L.258 10 PLIP interactions: 3 interactions with chain E, 7 interactions with chain C Hydrogen bonds: E:M.1, C:A.150, C:S.151, C:S.152, C:I.159 Water bridges: E:A.235, E:Y.254, C:T.161 Salt bridges: C:R.158, C:K.160 F6R.6: 13 residues within 4Å: Chain C: T.41, G.42, G.43, T.44, M.71, D.72, G.137, V.138, G.139, H.143, A.145, R.172, K.208 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:T.41, C:T.41, C:T.41, C:G.43, C:T.44, C:G.137, C:H.143, C:A.145, C:A.145 Water bridges: C:M.71, C:N.170, C:R.172, C:R.172, C:R.172 Salt bridges: C:R.172, C:K.208 F6R.7: 8 residues within 4Å: Chain B: M.1, R.2 Chain D: A.150, S.151, S.152, R.158, I.159, K.160 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:S.152 Water bridges: D:I.159, D:K.160, D:K.160, B:M.1, B:M.1 Salt bridges: D:R.158, D:K.160 F6R.8: 14 residues within 4Å: Chain D: P.40, T.41, G.42, G.43, T.44, D.72, G.137, V.138, G.139, H.143, A.145, F.146, R.172, K.208 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:T.41, D:T.41, D:G.43, D:T.44, D:G.137, D:H.143, D:H.143, D:A.145, D:A.145 Water bridges: D:T.41, D:D.72, D:R.172, D:R.172 Salt bridges: D:R.172, D:K.208 F6R.9: 8 residues within 4Å: Chain A: M.1, R.2, L.258 Chain E: S.151, S.152, R.158, I.159, K.160 10 PLIP interactions: 7 interactions with chain E, 3 interactions with chain A Hydrogen bonds: E:A.150, E:S.151, E:S.152, E:I.159, A:M.1 Water bridges: E:T.161, A:A.235, A:Y.254 Salt bridges: E:R.158, E:K.160 F6R.10: 13 residues within 4Å: Chain E: T.41, G.42, G.43, T.44, M.71, D.72, G.137, V.138, G.139, H.143, A.145, R.172, K.208 16 PLIP interactions: 16 interactions with chain E Hydrogen bonds: E:T.41, E:T.41, E:T.41, E:G.43, E:T.44, E:G.137, E:H.143, E:A.145, E:A.145 Water bridges: E:M.71, E:N.170, E:R.172, E:R.172, E:R.172 Salt bridges: E:R.172, E:K.208 F6R.11: 8 residues within 4Å: Chain D: M.1, R.2 Chain F: A.150, S.151, S.152, R.158, I.159, K.160 8 PLIP interactions: 6 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:S.152 Water bridges: F:I.159, F:K.160, F:K.160, D:M.1, D:M.1 Salt bridges: F:R.158, F:K.160 F6R.12: 14 residues within 4Å: Chain F: P.40, T.41, G.42, G.43, T.44, D.72, G.137, V.138, G.139, H.143, A.145, F.146, R.172, K.208 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:T.41, F:T.41, F:G.43, F:T.44, F:G.137, F:H.143, F:H.143, F:A.145, F:A.145 Water bridges: F:T.41, F:D.72, F:R.172, F:R.172 Salt bridges: F:R.172, F:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudino-Pinera, E. et al., Structural flexibility, an essential component of the allosteric activation in Escherichia coli glucosamine-6-phosphate deaminase. Acta Crystallogr.,Sect.D (2002)

Release Date

2002-01-04

Peptides

GLUCOSAMINE-6-PHOSPHATE DEAMINASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

GLUCOSAMINE-6-PHOSPHATE DEAMINASE

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