- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.66 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 8 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
TMP.4: 12 residues within 4Å:- Chain A: L.8, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, D.110, E.196
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:L.88
- Hydrogen bonds: A:G.10, A:K.25, A:Q.26, A:Q.82, A:Q.82, A:G.87, A:D.110
- Water bridges: A:G.11, A:G.11, A:G.109, A:D.110, A:E.161
- Salt bridges: A:K.162
TMP.5: 15 residues within 4Å:- Chain A: L.45, Y.114, G.115, H.116, D.117, F.118, K.249, V.250, A.251, E.255, I.256, R.259
- Chain D: G.218, R.219, G.220
18 PLIP interactions:12 interactions with chain A, 6 interactions with chain D- Hydrophobic interactions: A:L.45
- Hydrogen bonds: A:G.115, A:G.115, A:D.117, A:A.251, D:R.219, D:G.220
- Water bridges: A:H.116, A:D.117, A:F.118, A:F.118, A:K.249, A:Y.293, D:R.219, D:R.219, D:R.219
- Salt bridges: A:H.116
- pi-Cation interactions: D:R.219
TMP.7: 14 residues within 4Å:- Chain B: L.8, A.9, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, G.109, D.110, E.196
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:P.85, B:L.88
- Hydrogen bonds: B:G.10, B:Q.26, B:Q.82, B:Q.82, B:G.87, B:G.109, B:D.110, B:D.110
- Water bridges: B:K.162
TMP.8: 14 residues within 4Å:- Chain B: L.45, Y.114, G.115, H.116, D.117, F.118, V.250, A.251, E.255, I.256, R.259
- Chain C: G.218, R.219, G.220
14 PLIP interactions:5 interactions with chain C, 9 interactions with chain B- Hydrogen bonds: C:G.220, B:G.115, B:D.117, B:A.251
- Water bridges: C:R.219, C:R.219, C:R.219, B:D.117, B:D.117, B:F.118, B:K.249
- pi-Cation interactions: C:R.219
- Hydrophobic interactions: B:L.45
- Salt bridges: B:H.116
TMP.10: 14 residues within 4Å:- Chain C: L.8, A.9, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, G.109, D.110, E.196
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:L.88
- Hydrogen bonds: C:G.10, C:Q.26, C:Q.82, C:Q.82, C:G.87, C:G.109, C:D.110, C:D.110
- Water bridges: C:G.11, C:G.11, C:R.15, C:K.25, C:K.25, C:G.227
- Salt bridges: C:K.25
TMP.11: 14 residues within 4Å:- Chain B: G.218, R.219, G.220
- Chain C: L.45, Y.114, G.115, H.116, D.117, F.118, V.250, A.251, E.255, I.256, R.259
16 PLIP interactions:11 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:L.45
- Hydrogen bonds: C:Y.114, C:G.115, C:D.117, C:A.251, B:R.219, B:R.219, B:R.219, B:G.220
- Water bridges: C:S.41, C:D.117, C:C.252, C:E.255, C:Y.293
- Salt bridges: C:H.116
- pi-Cation interactions: B:R.219
TMP.12: 15 residues within 4Å:- Chain D: L.8, A.9, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, L.108, G.109, D.110, E.196
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:L.88
- Hydrogen bonds: D:G.10, D:Q.26, D:Q.82, D:Q.82, D:G.87, D:G.109, D:D.110, D:D.110
- Water bridges: D:G.11, D:K.25, D:K.162, D:K.162, D:K.162, D:K.162
- Salt bridges: D:K.25
TMP.13: 14 residues within 4Å:- Chain A: G.218, R.219, G.220
- Chain D: L.45, Y.114, G.115, H.116, D.117, F.118, V.250, A.251, E.255, I.256, R.259
15 PLIP interactions:10 interactions with chain D, 5 interactions with chain A- Hydrophobic interactions: D:L.45
- Hydrogen bonds: D:G.115, D:D.117, D:A.251, A:R.219, A:R.219, A:R.219, A:G.220
- Water bridges: D:D.117, D:D.117, D:K.249, D:C.252, D:Y.293
- Salt bridges: D:H.116
- pi-Cation interactions: A:R.219
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blankenfeldt, W. et al., The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA). EMBO J. (2000)
- Release Date
- 2000-12-27
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.66 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
- 8 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blankenfeldt, W. et al., The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA). EMBO J. (2000)
- Release Date
- 2000-12-27
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H