- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x CD: CADMIUM ION(Non-covalent)
CD.2: 6 residues within 4Å:- Chain A: C.11, K.46, H.185, E.222, D.233
- Ligands: A5P.3
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:C.11, A:H.185, A:E.222, A:E.222, A:D.233
CD.6: 4 residues within 4Å:- Chain B: C.11, H.185, E.222, D.233
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.185, B:E.222, B:E.222, B:D.233, H2O.8
CD.8: 6 residues within 4Å:- Chain C: C.11, K.46, H.185, E.222, D.233
- Ligands: A5P.9
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:C.11, C:H.185, C:E.222, C:E.222, C:D.233
CD.12: 4 residues within 4Å:- Chain D: C.11, H.185, E.222, D.233
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:H.185, D:E.222, D:E.222, D:D.233, H2O.19
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
A5P.3: 11 residues within 4Å:- Chain A: C.11, K.46, N.48, R.49, S.50, H.185, Q.188, D.233
- Chain B: R.106
- Ligands: PO4.1, CD.2
18 PLIP interactions:16 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.46, A:K.46, A:N.48, A:S.50, A:S.50, A:Q.188, A:Q.188
- Water bridges: A:R.49, A:S.51, A:S.54, A:K.124, A:K.124, A:Q.127, A:R.154, A:D.233, B:R.106
- Salt bridges: A:R.49, B:R.106
A5P.9: 11 residues within 4Å:- Chain C: C.11, K.46, N.48, R.49, S.50, H.185, Q.188, D.233
- Chain D: R.106
- Ligands: PO4.7, CD.8
18 PLIP interactions:16 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:K.46, C:K.46, C:N.48, C:S.50, C:S.50, C:Q.188, C:Q.188
- Water bridges: C:R.49, C:S.51, C:S.54, C:K.124, C:K.124, C:Q.127, C:R.154, C:D.233, D:R.106
- Salt bridges: C:R.49, D:R.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duewel, H.S. et al., Substrate and metal complexes of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Aquifex aeolicus at 1.9-A resolution. Implications for the condensation mechanism. J.Biol.Chem. (2001)
- Release Date
- 2001-04-21
- Peptides
- 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Duewel, H.S. et al., Substrate and metal complexes of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Aquifex aeolicus at 1.9-A resolution. Implications for the condensation mechanism. J.Biol.Chem. (2001)
- Release Date
- 2001-04-21
- Peptides
- 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B