SMTL ID : 1fyr.3 (5 other biounits)

DIMER FORMATION THROUGH DOMAIN SWAPPING IN THE CRYSTAL STRUCTURE OF THE GRB2-SH2 AC-PYVNV COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x ACE- PTR- VAL- ASN- VAL: HEPATOCYTE GROWTH FACTOR RECEPTOR PEPTIDE(Non-covalent)

ACE-PTR-VAL-ASN-VAL.1: 14 residues within 4Å: Chain A: R.20, R.39, S.41, S.43, S.49, Q.59, H.60, F.61, K.62, L.64, L.73, W.74 Chain C: A.21, E.25 24 PLIP interactions: 21 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:Q.59, A:H.60, A:F.61, A:F.61, A:W.74, C:A.21, C:E.25 Hydrogen bonds: A:R.20, A:R.20, A:S.41, A:S.43, A:S.43, A:S.43, A:S.49, A:H.60, A:K.62, A:K.62 Water bridges: A:E.42, A:H.60, A:H.60, C:E.25 Salt bridges: A:R.20, A:R.39, A:K.62 ACE-PTR-VAL-ASN-VAL.2: 13 residues within 4Å: Chain B: R.20, R.39, S.41, E.42, S.43, S.49, Q.59, H.60, F.61, K.62, L.64, L.73 Chain D: A.21 21 PLIP interactions: 20 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:Q.59, B:H.60, B:F.61, B:F.61, B:K.62 Hydrogen bonds: B:R.20, B:R.20, B:E.42, B:S.43, B:S.43, B:S.49, B:H.60, B:K.62, B:L.73 Water bridges: B:H.60, D:E.25 Salt bridges: B:R.20, B:R.39, B:K.62 pi-Cation interactions: B:R.20, B:K.62 ACE-PTR-VAL-ASN-VAL.3: 13 residues within 4Å: Chain A: A.21 Chain C: R.20, R.39, S.41, E.42, S.43, S.49, Q.59, H.60, F.61, K.62, L.73, W.74 20 PLIP interactions: 19 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:Q.59, C:H.60, C:F.61, C:K.62, C:W.74 Hydrogen bonds: C:R.20, C:R.20, C:S.41, C:E.42, C:S.43, C:S.49, C:H.60, C:K.62, C:L.73 Water bridges: C:S.41, C:H.60, A:E.24 Salt bridges: C:R.20, C:R.39 pi-Cation interactions: C:R.20 ACE-PTR-VAL-ASN-VAL.4: 13 residues within 4Å: Chain B: A.21 Chain D: R.20, R.39, S.41, S.43, S.49, Q.59, H.60, F.61, K.62, L.64, L.73, W.74 25 PLIP interactions: 24 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:Q.59, D:H.60, D:F.61, D:F.61, D:W.74, B:A.21 Hydrogen bonds: D:R.20, D:R.20, D:S.41, D:S.43, D:S.43, D:S.49, D:H.60, D:K.62, D:K.62 Water bridges: D:S.43, D:S.43, D:H.60, D:H.60, D:K.62 Salt bridges: D:R.20, D:R.39, D:K.62 pi-Cation interactions: D:R.20, D:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiering, N. et al., Dimer formation through domain swapping in the crystal structure of the Grb2-SH2-Ac-pYVNV complex. Biochemistry (2000)

Release Date

2000-12-06

Peptides

GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2

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