SMTL ID : 1fyr.5 (5 other biounits)

DIMER FORMATION THROUGH DOMAIN SWAPPING IN THE CRYSTAL STRUCTURE OF THE GRB2-SH2 AC-PYVNV COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

3 x ACE- PTR- VAL- ASN- VAL: HEPATOCYTE GROWTH FACTOR RECEPTOR PEPTIDE(Non-covalent)

ACE-PTR-VAL-ASN-VAL.1: 12 residues within 4Å: Chain A: R.20, R.39, S.41, S.43, S.49, Q.59, H.60, F.61, K.62, L.64, L.73, W.74 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Q.59, A:H.60, A:F.61, A:F.61, A:W.74 Hydrogen bonds: A:R.20, A:R.20, A:S.41, A:S.43, A:S.43, A:S.43, A:S.49, A:H.60, A:K.62, A:K.62 Water bridges: A:E.42, A:H.60, A:H.60 Salt bridges: A:R.20, A:R.39, A:K.62 ACE-PTR-VAL-ASN-VAL.2: 12 residues within 4Å: Chain B: R.20, R.39, S.41, E.42, S.43, S.49, Q.59, H.60, F.61, K.62, L.73, W.74 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Q.59, B:H.60, B:F.61, B:K.62, B:W.74 Hydrogen bonds: B:R.20, B:R.20, B:S.41, B:E.42, B:S.43, B:S.49, B:H.60, B:K.62, B:L.73 Water bridges: B:S.41, B:H.60 Salt bridges: B:R.20, B:R.39 pi-Cation interactions: B:R.20 ACE-PTR-VAL-ASN-VAL.3: 12 residues within 4Å: Chain C: R.20, R.39, S.41, S.43, S.49, Q.59, H.60, F.61, K.62, L.64, L.73, W.74 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:Q.59, C:H.60, C:F.61, C:F.61, C:W.74 Hydrogen bonds: C:R.20, C:R.20, C:S.41, C:S.43, C:S.43, C:S.49, C:H.60, C:K.62, C:K.62 Water bridges: C:S.43, C:S.43, C:H.60, C:H.60, C:K.62 Salt bridges: C:R.20, C:R.39, C:K.62 pi-Cation interactions: C:R.20, C:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiering, N. et al., Dimer formation through domain swapping in the crystal structure of the Grb2-SH2-Ac-pYVNV complex. Biochemistry (2000)

Release Date

2000-12-06

Peptides

GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2

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