SMTL ID : 1g27.1 (2 other biounits)

CRYSTAL STRUCTURE OF E.COLI POLYPEPTIDE DEFORMYLASE COMPLEXED WITH THE INHIBITOR BB-3497

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.50, C.90, H.132, H.136 Ligands: BB1.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.90, A:H.132, A:H.136

1 x BB1: 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE(Non-covalent)

BB1.2: 15 residues within 4Å: Chain A: E.42, G.43, I.44, G.45, Q.50, E.88, G.89, C.90, L.91, R.97, C.129, H.132, E.133, H.136 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.44 Hydrogen bonds: A:I.44, A:Q.50, A:G.89, A:G.89, A:L.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clements, J.M. et al., Antibiotic activity and characterization of BB-3497, a novel peptide deformylase inhibitor. Antimicrob.Agents Chemother. (2001)

Release Date

2001-10-17

Peptides

POLYPEPTIDE DEFORMYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLYPEPTIDE DEFORMYLASE

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