SMTL ID : 1g4i.1

Crystal structure of the bovine pancreatic phospholipase A2 at 0.97A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: Y.28, G.30, G.32, D.49 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.28, A:G.30, A:G.32, A:D.49, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: K.12, E.81, I.82, R.100, I.104 Ligand excluded by PLIP

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 7 residues within 4Å: Chain A: L.2, F.5, N.6, N.23, G.30 Ligands: MRD.4, MPD.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.2 Hydrogen bonds: A:G.30 MRD.4: 12 residues within 4Å: Chain A: L.2, F.5, N.6, P.18, L.19, F.22, N.23, C.29, G.30, F.106 Ligands: MRD.3, MPD.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.5, A:L.19, A:F.22, A:F.106 MRD.5: 5 residues within 4Å: Chain A: I.13, S.15, S.16, D.21, F.22 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.21, A:F.22 Hydrogen bonds: A:S.15, A:D.21

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 7 residues within 4Å: Chain A: L.2, N.23, G.30, L.31, Y.69 Ligands: MRD.3, MRD.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.2 Hydrogen bonds: A:G.30, A:L.31 MPD.7: 3 residues within 4Å: Chain A: E.17, L.19, L.20 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.19 Water bridges: A:N.6, A:E.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steiner, R.A. et al., X-ray structure of bovine pancreatic phospholipase A2 at atomic resolution. Acta Crystallogr.,Sect.D (2001)

Release Date

2001-04-04

Peptides

PHOSPHOLIPASE A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE A2

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