SMTL ID : 1gcw.1

CO form hemoglobin from mustelus griseus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: S.39, Y.42, F.43, H.58, K.61, V.62, A.65, V.66, L.83, H.87, L.91, V.93, N.97, F.98, L.101, C.132, L.135 Ligands: CMO.2 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:V.66, A:L.91, A:V.93, A:V.93, A:F.98, A:F.98, A:L.135 Salt bridges: A:H.58, A:K.61 Metal complexes: A:H.87 HEM.3: 16 residues within 4Å: Chain B: M.31, Y.41, F.42, H.53, I.56, A.60, L.78, K.81, H.82, L.86, V.88, S.92, F.93, L.96, I.131 Ligands: CMO.4 17 PLIP interactions: 16 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:Y.41, B:F.42, B:F.42, B:F.42, B:A.60, B:L.78, B:L.86, B:V.88, B:V.88, B:F.93, B:L.96, B:I.131, B:I.131 Salt bridges: B:K.81 pi-Stacking: B:H.82 Metal complexes: B:H.82, CMO.4 HEM.5: 15 residues within 4Å: Chain C: S.39, Y.42, F.43, H.58, K.61, A.65, L.83, H.87, L.91, V.93, N.97, F.98, L.101, L.135 Ligands: CMO.6 13 PLIP interactions: 13 interactions with chain C, Hydrophobic interactions: C:Y.42, C:F.43, C:F.43, C:A.65, C:L.83, C:L.91, C:V.93, C:F.98, C:F.98, C:L.101, C:L.135 Salt bridges: C:H.58 Metal complexes: C:H.87 HEM.7: 17 residues within 4Å: Chain D: T.38, Y.41, F.42, H.53, I.56, V.57, A.60, L.78, K.81, H.82, L.86, V.88, S.92, F.93, L.96, I.131 Ligands: CMO.8 19 PLIP interactions: 19 interactions with chain D, Hydrophobic interactions: D:T.38, D:Y.41, D:F.42, D:F.42, D:F.42, D:V.57, D:A.60, D:L.78, D:L.86, D:L.86, D:V.88, D:L.96, D:L.96, D:I.131 Salt bridges: D:H.53, D:K.81, D:K.81 pi-Stacking: D:H.82 Metal complexes: D:H.82

4 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2: 3 residues within 4Å: Chain A: H.58, V.62 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.58 CMO.4: 4 residues within 4Å: Chain B: F.42, H.53, V.57 Ligands: HEM.3 No protein-ligand interaction detected (PLIP) CMO.6: 4 residues within 4Å: Chain C: H.58, V.62, H.87 Ligands: HEM.5 No protein-ligand interaction detected (PLIP) CMO.8: 4 residues within 4Å: Chain D: F.42, H.53, V.57 Ligands: HEM.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naoi, Y. et al., The functional similarity and structural diversity of human and cartilaginous fish hemoglobins. J.Mol.Biol. (2001)

Release Date

2000-09-06

Peptides

PROTEIN (HEMOGLOBIN): AC
PROTEIN (HEMOGLOBIN): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

PROTEIN (HEMOGLOBIN)

PROTEIN (HEMOGLOBIN)

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