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SMTL ID : 1gg5.1
(1 other biounit)
CRYSTAL STRUCTURE OF A COMPLEX OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AND A CHEMOTHERAPEUTIC DRUG (E09) AT 2.5 A RESOLUTION
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
FAD
:
FLAVIN-ADENINE DINUCLEOTIDE
(Non-covalent)
FAD.1:
24 residues within 4Å:
Chain A:
H.11
,
T.15
,
S.16
,
F.17
,
N.18
,
A.20
,
P.102
,
L.103
,
Q.104
,
W.105
,
F.106
,
T.147
,
T.148
,
G.149
,
G.150
,
Y.155
,
I.192
,
R.200
,
L.204
Chain B:
Q.66
,
Y.67
,
P.68
,
E.117
Ligands:
E09.4
21
PLIP interactions
:
17 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:Q.104
,
A:Q.104
,
B:Y.67
,
B:P.68
,
B:E.117
Hydrogen bonds:
A:F.17
,
A:N.18
,
A:N.18
,
A:L.103
,
A:L.103
,
A:W.105
,
A:F.106
,
A:T.147
,
A:T.147
,
A:G.149
,
A:G.150
,
A:Y.155
,
A:Y.155
,
A:R.200
,
B:Q.66
Salt bridges:
A:H.11
FAD.3:
24 residues within 4Å:
Chain A:
Q.66
,
Y.67
,
P.68
,
E.117
Chain B:
H.11
,
T.15
,
S.16
,
F.17
,
N.18
,
A.20
,
P.102
,
L.103
,
Q.104
,
W.105
,
F.106
,
T.147
,
T.148
,
G.149
,
G.150
,
Y.155
,
I.192
,
R.200
,
L.204
Ligands:
E09.2
20
PLIP interactions
:
2 interactions with chain A
,
18 interactions with chain B
Hydrophobic interactions:
A:Y.67
,
B:Q.104
Hydrogen bonds:
A:Q.66
,
B:F.17
,
B:N.18
,
B:N.18
,
B:L.103
,
B:L.103
,
B:W.105
,
B:F.106
,
B:T.147
,
B:T.147
,
B:G.149
,
B:G.150
,
B:Y.155
,
B:Y.155
,
B:R.200
Salt bridges:
B:H.11
pi-Stacking:
B:F.17
,
B:F.17
2 x
E09
:
3-HYDROXYMETHYL-5-AZIRIDINYL-1METHYL-2-[1H-INDOLE-4,7-DIONE]-PROPANOL
(Non-covalent)
E09.2:
11 residues within 4Å:
Chain A:
P.68
,
Y.126
,
Y.128
,
G.174
,
F.178
Chain B:
W.105
,
F.106
,
G.149
,
G.150
,
H.161
Ligands:
FAD.3
3
PLIP interactions
:
2 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:F.178
,
B:W.105
pi-Stacking:
A:Y.128
E09.4:
12 residues within 4Å:
Chain A:
W.105
,
F.106
,
G.149
,
G.150
,
H.161
,
H.194
Chain B:
P.68
,
Y.126
,
Y.128
,
G.174
,
F.178
Ligands:
FAD.1
2
PLIP interactions
:
1 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:H.194
pi-Stacking:
B:Y.128
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Faig, M. et al., Structure-based development of anticancer drugs: complexes of NAD(P)H:quinone oxidoreductase 1 with chemotherapeutic quinones. Structure (2001)
Release Date
2001-09-12
Peptides
NAD(P)H DEHYDROGENASE [QUINONE] 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
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Secondary Structure
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NAD(P)H DEHYDROGENASE [QUINONE] 1
Toggle Identical (AB)
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