SMTL ID : 8pqn.2 (1 other biounit)

NQO1 bound to RBS-10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

homo-dimer

Ligands

1 x 978: ~{N}-[4-[(3-methylphenyl)carbonylamino]phenyl]-5-nitro-furan-2-carboxamide(Non-covalent)

978.1: 15 residues within 4Å: Chain A: H.11, T.15, S.16, F.17, N.18, A.20, P.102, Q.104, T.147, I.192, R.200, I.201, L.204 Chain B: N.64, Q.66 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.17, A:A.20, A:I.201, A:L.204 Hydrogen bonds: A:F.17, A:R.200, B:Q.66, B:Q.66

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 28 residues within 4Å: Chain A: N.64, Q.66, Y.67, P.68, Y.126, Y.128, F.178 Chain B: H.11, T.15, S.16, F.17, N.18, A.20, P.102, L.103, Q.104, W.105, F.106, T.147, T.148, G.149, G.150, Y.155, H.161, I.192, R.200, I.201, L.204 13 PLIP interactions: 2 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.178, B:F.106 Hydrogen bonds: A:Q.66, B:F.17, B:N.18, B:L.103, B:L.103, B:L.103, B:W.105, B:T.147, B:R.200 Salt bridges: B:H.11 pi-Stacking: B:W.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barbosa, B.M.G. et al., Discovery and Mechanistic Elucidation of NQO1-Bioactivatable Small Molecules That Overcome Resistance to Degraders. Angew.Chem.Int.Ed.Engl. (2024)

Release Date

2024-01-10

Peptides

NAD(P)H dehydrogenase [quinone] 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

NAD(P)H dehydrogenase [quinone] 1

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