SMTL ID : 1gjn.1

Hydrogen Peroxide Derived Myoglobin Compound II at pH 5.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: T.39, K.42, F.43, K.45, H.64, V.67, V.68, A.71, L.72, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, F.138 Ligands: OH.2 24 PLIP interactions: 23 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:F.43, A:V.67, A:V.68, A:A.71, A:L.89, A:L.89, A:I.99, A:Y.103, A:I.107, A:F.138, A:F.138 Hydrogen bonds: A:S.92 Water bridges: A:K.45, A:H.64 Salt bridges: A:K.45, A:H.93, A:H.97 pi-Stacking: A:H.93, A:H.97 Metal complexes: A:H.93, OH.2

1 x OH: HYDROXIDE ION(Non-covalent)

OH.2: 4 residues within 4Å: Chain A: F.43, H.64, V.68 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.64

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.50, T.51, E.52 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.52 Water bridges: A:A.53, A:A.53 SO4.4: 3 residues within 4Å: Chain A: H.81, H.82, E.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.83 Water bridges: A:H.81, A:H.81, A:A.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hersleth, H.-P. et al., An Iron Hydroxide Moiety in the 1.35 A Resolution Structure of Hydrogen Peroxide Derived Myoglobin Compound II at Ph 5.2. J.Biol.Inorg.Chem. (2002)

Release Date

2002-03-01

Peptides

MYOGLOBIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYOGLOBIN

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