- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x OXL: OXALATE ION(Non-covalent)
OXL.2: 12 residues within 4Å:- Chain A: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.1, MN.3
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:Y.90, A:N.396, A:N.441, A:N.442
- Water bridges: A:K.161, A:K.161, A:K.161
- Salt bridges: A:R.143, A:K.161, A:K.161
OXL.14: 12 residues within 4Å:- Chain B: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.13, MN.15
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.396, B:N.441, B:N.442
- Water bridges: B:K.161
- Salt bridges: B:R.143, B:K.161, B:K.161
OXL.20: 12 residues within 4Å:- Chain C: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.19, MN.21
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.396, C:N.441, C:N.442
- Water bridges: C:K.161
- Salt bridges: C:R.143, C:K.161, C:K.161
OXL.31: 12 residues within 4Å:- Chain D: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.30, MN.32
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.396, D:N.441, D:N.442
- Salt bridges: D:R.143, D:K.161
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 5 residues within 4Å:- Chain A: R.143, E.233, D.234, D.257
- Ligands: OXL.2
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.233, A:D.234, A:D.257, H2O.81
MN.15: 5 residues within 4Å:- Chain B: K.161, E.233, D.234, D.257
- Ligands: OXL.14
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.233, B:D.234, B:D.257, H2O.152
MN.21: 4 residues within 4Å:- Chain C: E.233, D.234, D.257
- Ligands: OXL.20
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.233, C:D.234, C:D.257, H2O.230
MN.32: 5 residues within 4Å:- Chain D: K.161, E.233, D.234, D.257
- Ligands: OXL.31
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.233, D:D.234, D:D.257
- 16 x NA: SODIUM ION(Non-functional Binders)
NA.4: 2 residues within 4Å:- Chain A: L.270, E.308
Ligand excluded by PLIPNA.5: 2 residues within 4Å:- Chain A: L.270, L.273
Ligand excluded by PLIPNA.6: 6 residues within 4Å:- Chain A: Y.444, V.445, P.447, G.448, S.498, I.501
Ligand excluded by PLIPNA.7: 5 residues within 4Å:- Chain A: T.276, H.283, T.362, R.388, I.390
Ligand excluded by PLIPNA.8: 6 residues within 4Å:- Chain A: D.182, G.184, T.185, Y.196, G.198, L.199
Ligand excluded by PLIPNA.9: 4 residues within 4Å:- Chain A: R.107, P.108
- Chain B: L.7, N.13
Ligand excluded by PLIPNA.16: 3 residues within 4Å:- Chain B: D.81, I.82, E.83
Ligand excluded by PLIPNA.22: 7 residues within 4Å:- Chain C: E.233, D.234, F.235, A.240, N.255, D.257, E.292
Ligand excluded by PLIPNA.23: 3 residues within 4Å:- Chain C: G.296, N.299, D.463
Ligand excluded by PLIPNA.24: 5 residues within 4Å:- Chain C: Y.60, V.94, G.156, V.159, G.160
Ligand excluded by PLIPNA.25: 5 residues within 4Å:- Chain C: R.143, L.145, G.146, L.147, G.148
Ligand excluded by PLIPNA.33: 2 residues within 4Å:- Chain D: L.26, F.540
Ligand excluded by PLIPNA.34: 7 residues within 4Å:- Chain D: A.393, S.395, N.396, A.401, S.420, G.421, S.422
Ligand excluded by PLIPNA.35: 5 residues within 4Å:- Chain D: R.388, G.414, R.415, G.416, I.417
Ligand excluded by PLIPNA.36: 5 residues within 4Å:- Chain D: R.248, Y.251, T.253, H.460, I.461
Ligand excluded by PLIPNA.37: 2 residues within 4Å:- Chain D: F.50, R.84
Ligand excluded by PLIP- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 3 residues within 4Å:- Chain A: G.15, M.16, Q.42
Ligand excluded by PLIPCL.11: 5 residues within 4Å:- Chain A: H.100, G.102, L.103, Y.153, L.195
Ligand excluded by PLIPCL.12: 2 residues within 4Å:- Chain A: H.460
- Chain D: P.519
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain B: G.15, M.16, Q.42
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain B: V.492, T.493, Q.495, Q.496
Ligand excluded by PLIPCL.26: 2 residues within 4Å:- Chain C: N.481, P.490
Ligand excluded by PLIPCL.27: 6 residues within 4Å:- Chain C: D.140, E.142, Y.209, F.235, A.236, N.239
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain C: P.92, P.397, T.398, S.399
Ligand excluded by PLIPCL.29: 6 residues within 4Å:- Chain C: H.100, Y.101, G.102, L.103, Y.153, L.195
Ligand excluded by PLIPCL.38: 2 residues within 4Å:- Chain D: M.16, Q.42
Ligand excluded by PLIPCL.39: 6 residues within 4Å:- Chain D: Y.444, V.445, P.447, G.448, S.498, I.501
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain B: K.553
- Chain D: C.35, F.36
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme. Protein Sci. (2002)
- Release Date
- 2002-05-23
- Peptides
- MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x OXL: OXALATE ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 16 x NA: SODIUM ION(Non-functional Binders)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme. Protein Sci. (2002)
- Release Date
- 2002-05-23
- Peptides
- MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P