SMTL ID : 1gug.1 (1 other biounit)

MopII from Clostridium pasteurianum complexed with tungstate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-hexamer

Ligands

8 x WO4: TUNGSTATE(VI)ION(Non-covalent)

WO4.1: 9 residues within 4Å: Chain A: I.39, S.40, S.43 Chain D: M.65 Chain E: S.4, A.5, R.6, K.60, S.61 8 PLIP interactions: 6 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:S.4, E:S.4, E:R.6, E:K.60, E:K.60, E:S.61, A:S.40, A:S.43 WO4.2: 12 residues within 4Å: Chain A: G.19, V.20, V.21, T.22 Chain B: G.19, V.20, V.21, T.22 Chain C: G.19, V.20, V.21, T.22 12 PLIP interactions: 5 interactions with chain A, 4 interactions with chain C, 3 interactions with chain B Hydrogen bonds: A:V.20, A:V.21, A:T.22, A:T.22, A:T.22, C:V.20, C:V.21, C:T.22, C:T.22, B:V.20, B:V.21, B:T.22 WO4.3: 9 residues within 4Å: Chain B: I.39, S.40, S.43 Chain D: S.4, A.5, R.6, K.60, S.61 Chain F: M.65 8 PLIP interactions: 6 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:S.4, D:S.4, D:R.6, D:K.60, D:K.60, D:S.61, B:S.40, B:S.43 WO4.6: 9 residues within 4Å: Chain C: I.39, S.40, S.43 Chain E: M.65 Chain F: S.4, A.5, R.6, K.60, S.61 7 PLIP interactions: 5 interactions with chain F, 2 interactions with chain C Hydrogen bonds: F:S.4, F:R.6, F:K.60, F:K.60, F:S.61, C:S.40, C:S.43 WO4.7: 9 residues within 4Å: Chain A: M.65 Chain B: S.4, A.5, R.6, K.60, S.61 Chain D: I.39, S.40, S.43 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:S.4, B:S.4, B:R.6, B:K.60, B:K.60, B:S.61, D:S.40, D:S.43 WO4.8: 12 residues within 4Å: Chain D: G.19, V.20, V.21, T.22 Chain E: G.19, V.20, V.21, T.22 Chain F: G.19, V.20, V.21, T.22 12 PLIP interactions: 3 interactions with chain E, 5 interactions with chain D, 4 interactions with chain F Hydrogen bonds: E:V.20, E:V.21, E:T.22, D:V.20, D:V.21, D:T.22, D:T.22, D:T.22, F:V.20, F:V.21, F:T.22, F:T.22 WO4.9: 9 residues within 4Å: Chain A: S.4, A.5, R.6, K.60, S.61 Chain C: M.65 Chain E: I.39, S.40, S.43 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:S.4, A:S.4, A:R.6, A:K.60, A:K.60, A:S.61, E:S.40, E:S.43 WO4.12: 9 residues within 4Å: Chain B: M.65 Chain C: S.4, A.5, R.6, K.60, S.61 Chain F: I.39, S.40, S.43 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:S.4, C:R.6, C:K.60, C:K.60, C:S.61, F:S.40, F:S.43

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain C: K.17, K.18 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain F: K.17, K.18 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain B: D.63 Chain C: D.63 Chain E: D.63 Chain F: D.63 Ligands: NA.11 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:D.63 Water bridges: E:D.63 NA.11: 5 residues within 4Å: Chain B: D.63 Chain C: D.63 Chain E: D.63 Chain F: D.63 Ligands: NA.5 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:D.63 Water bridges: E:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuettelkopf, A.W. et al., Passive Acquisition of Ligand by the Mopii Molbindin from Clostridium Pasteurianum: Structures of Apo and Oxyanion-Bound Forms. J.Biol.Chem. (2002)

Release Date

2002-02-08

Peptides

MOLYBDATE BINDING PROTEIN II: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
D

E
E

F
F

MOLYBDATE BINDING PROTEIN II

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