- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
CA.1: 6 residues within 4Å:- Chain A: D.58, N.59, E.136, Q.137, D.138
- Ligands: CDG.3
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.58, A:D.58, A:E.136, A:Q.137, A:D.138
CA.2: 4 residues within 4Å:- Chain A: E.136, D.138, Q.148
- Ligands: CDG.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.136, A:D.138, A:D.138
CA.4: 6 residues within 4Å:- Chain B: D.58, N.59, E.136, Q.137, D.138
- Ligands: CDG.6
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.58, B:D.58, B:E.136, B:Q.137, B:D.138
CA.5: 4 residues within 4Å:- Chain B: E.136, D.138, Q.148
- Ligands: CDG.6
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.136, B:D.138, B:D.138
CA.7: 6 residues within 4Å:- Chain C: D.58, N.59, E.136, Q.137, D.138
- Ligands: CDG.9
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.58, C:D.58, C:E.136, C:Q.137, C:D.138
CA.8: 4 residues within 4Å:- Chain C: E.136, D.138, Q.148
- Ligands: CDG.9
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:E.136, C:D.138, C:D.138
CA.10: 6 residues within 4Å:- Chain D: D.58, N.59, E.136, Q.137, D.138
- Ligands: CDG.12
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.58, D:D.58, D:E.136, D:Q.137, D:D.138
CA.11: 4 residues within 4Å:- Chain D: E.136, D.138, Q.148
- Ligands: CDG.12
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.136, D:D.138, D:D.138
CA.13: 5 residues within 4Å:- Chain E: D.58, N.59, E.136, Q.137, D.138
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.58, E:E.136, E:E.136, E:Q.137, E:D.138
- 4 x CDG: METHYL 4,6-O-[(1R)-1-CARBOXYETHYLIDENE]-BETA-D-GALACTOPYRANOSIDE(Non-covalent)
CDG.3: 10 residues within 4Å:- Chain A: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.1, CA.2
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.62
- Hydrogen bonds: A:Y.74, A:Q.148, A:Q.148
- Salt bridges: A:K.79
CDG.6: 10 residues within 4Å:- Chain B: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.4, CA.5
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.62
- Hydrogen bonds: B:N.59, B:Q.148
- Salt bridges: B:K.79
CDG.9: 10 residues within 4Å:- Chain C: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.7, CA.8
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:L.62
- Hydrogen bonds: C:Y.74, C:Q.148
- Salt bridges: C:K.79
CDG.12: 10 residues within 4Å:- Chain D: D.58, N.59, L.62, Y.74, K.79, E.136, D.138, Q.148
- Ligands: CA.10, CA.11
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:L.62
- Hydrogen bonds: D:N.59, D:Y.74, D:Q.148, D:Q.148
- Salt bridges: D:K.79
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thompson, D. et al., The Structures of Crystalline Complexes of Human Serum Amyloid P Component with its Carbohydrate Ligand, the Cyclic Pyruvate Acetal of Galactose. J.Mol.Biol. (2002)
- Release Date
- 2003-05-22
- Peptides
- SERUM AMYLOID P-COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-pentamer
- Ligands
- 9 x CA: CALCIUM ION(Non-covalent)
- 4 x CDG: METHYL 4,6-O-[(1R)-1-CARBOXYETHYLIDENE]-BETA-D-GALACTOPYRANOSIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thompson, D. et al., The Structures of Crystalline Complexes of Human Serum Amyloid P Component with its Carbohydrate Ligand, the Cyclic Pyruvate Acetal of Galactose. J.Mol.Biol. (2002)
- Release Date
- 2003-05-22
- Peptides
- SERUM AMYLOID P-COMPONENT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E