SMTL ID : 3d5o.1

Structural recognition and functional activation of FcrR by innate pentraxins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-5-mer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: H.94, L.95, E.96 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain B: H.78, L.119, R.120, Q.121 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain B: H.19, N.21, G.141, R.193 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain B: D.42, L.43, S.44, R.45 Chain F: K.83 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain C: H.78, L.119, R.120, Q.121 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain C: H.19, N.21, K.130, R.193 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain C: L.43, S.44, R.45 Chain D: K.83 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain D: H.78, L.119, R.120 Ligand excluded by PLIP SO4.12: 9 residues within 4Å: Chain A: P.2, Q.69, S.74, L.75 Chain D: H.19, N.21, K.130, E.191, R.193 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain D: D.42, L.43, S.44, R.45 Chain E: K.83 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain E: L.119, R.120 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain E: H.19, N.21, R.193 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: K.83 Chain E: L.43, S.44, R.45 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain F: H.78, L.119, R.120 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain F: H.19, N.21, K.130, R.193 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain C: K.83 Chain F: L.43, S.44, R.45 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: S.34, D.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.34, A:D.35

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain B: Q.31, N.32 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain C: Q.31, N.32, E.99 No protein-ligand interaction detected (PLIP) NAG.14: 3 residues within 4Å: Chain D: Q.31, N.32, E.99 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:Q.31 NAG.18: 5 residues within 4Å: Chain E: Q.31, N.32, E.99, S.101, V.163 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Q.31, E:S.101, E:S.101 NAG.22: 2 residues within 4Å: Chain F: Q.31, N.32 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:Q.31 Water bridges: F:N.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., Structural recognition and functional activation of FcgammaR by innate pentraxins. Nature (2008)

Release Date

2008-11-11

Peptides

Low affinity immunoglobulin gamma Fc region receptor II-a: A
Serum amyloid P-component: BCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
D

C
A

D
B

E
C

F
E

Low affinity immunoglobulin gamma Fc region receptor II-a

Serum amyloid P-component

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