SMTL ID : 1hnu.1 (1 other biounit)

CRYSTAL STRUCTURE OF PEROXISOMAL DELTA3-DELTA2-ENOYL-COA ISOMERASE FROM SACCHAROMYCES CEREVISIAE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

12 x REO: PERRHENATE(Non-covalent)

REO.1: 7 residues within 4Å: Chain A: L.167, L.236, K.237, N.239, H.240 Chain B: T.171, Y.175 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.175, A:L.236, A:N.239, A:N.239, A:H.240 REO.2: 7 residues within 4Å: Chain A: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.126, A:E.158 Water bridges: A:A.70 REO.5: 7 residues within 4Å: Chain B: L.167, L.236, K.237, N.239, H.240 Chain C: T.171, Y.175 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:L.236, B:N.239, B:N.239, B:H.240, C:Y.175 REO.6: 7 residues within 4Å: Chain B: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.126, B:E.158 Water bridges: B:A.70 REO.9: 7 residues within 4Å: Chain A: T.171, Y.175 Chain C: L.167, L.236, K.237, N.239, H.240 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:L.236, C:N.239, C:N.239, C:H.240, A:Y.175 REO.10: 7 residues within 4Å: Chain C: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.126, C:E.158 Water bridges: C:A.70 REO.13: 7 residues within 4Å: Chain D: L.167, L.236, K.237, N.239, H.240 Chain E: T.171, Y.175 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:L.236, D:N.239, D:N.239, D:H.240 REO.14: 7 residues within 4Å: Chain D: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:L.126, D:E.158 Water bridges: D:A.70 REO.17: 7 residues within 4Å: Chain E: L.167, L.236, K.237, N.239, H.240 Chain F: T.171, Y.175 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:L.236, E:N.239, E:N.239, E:H.240 REO.18: 7 residues within 4Å: Chain E: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:L.126, E:E.158 Water bridges: E:A.70 REO.21: 7 residues within 4Å: Chain D: T.171, Y.175 Chain F: L.167, L.236, K.237, N.239, H.240 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:L.236, F:N.239, F:N.239, F:H.240 REO.22: 7 residues within 4Å: Chain F: F.72, F.97, G.125, L.126, F.150, L.153, E.158 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:L.126, F:E.158 Water bridges: F:A.70

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: A.132, L.133, C.134, K.168, K.237, F.244 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:T.171, A:D.135 Hydrogen bonds: A:K.168, A:K.168 EDO.4: 5 residues within 4Å: Chain A: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.64, A:R.64, A:N.141, A:K.143, A:S.203 EDO.7: 6 residues within 4Å: Chain B: A.132, L.133, C.134, K.168, K.237, F.244 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Water bridges: C:T.171, B:D.135 Hydrogen bonds: B:K.168, B:K.168 EDO.8: 5 residues within 4Å: Chain B: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.64, B:R.64, B:N.141, B:K.143, B:S.203 EDO.11: 6 residues within 4Å: Chain C: A.132, L.133, C.134, K.168, K.237, F.244 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Water bridges: A:T.171, C:D.135 Hydrogen bonds: C:K.168, C:K.168 EDO.12: 5 residues within 4Å: Chain C: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.64, C:R.64, C:N.141, C:K.143, C:S.203 EDO.15: 6 residues within 4Å: Chain D: A.132, L.133, C.134, K.168, K.237, F.244 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.168, D:K.168 EDO.16: 5 residues within 4Å: Chain D: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.64, D:R.64, D:N.141, D:K.143, D:S.203 EDO.19: 6 residues within 4Å: Chain E: A.132, L.133, C.134, K.168, K.237, F.244 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.168, E:K.168 EDO.20: 5 residues within 4Å: Chain E: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:R.64, E:R.64, E:N.141, E:K.143, E:S.203 EDO.23: 6 residues within 4Å: Chain F: A.132, L.133, C.134, K.168, K.237, F.244 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.168, F:K.168 EDO.24: 5 residues within 4Å: Chain F: R.64, N.141, K.143, P.202, S.203 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.64, F:R.64, F:N.141, F:K.143, F:S.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mursula, A.M. et al., The crystal structure of delta(3)-delta(2)-enoyl-CoA isomerase. J.Mol.Biol. (2001)

Release Date

2001-06-20

Peptides

D3,D2-ENOYL COA ISOMERASE ECI1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

D3,D2-ENOYL COA ISOMERASE ECI1

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