SMTL ID : 1huo.1 (1 other biounit)

CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x DC- DG- DA- DC- DG- DC- DC: 5'-D(P*CP*GP*AP*CP*GP*CP*C)-3'(Non-covalent)

DC-DG-DA-DC-DG-DC-DC.1: 22 residues within 4Å: Chain A: G.5, G.6, C.7, G.8, T.9, C.10, G.11 Chain B: V.103, T.104, G.105, I.106, G.107, P.108, S.109, A.110, D.190, D.192, M.236, R.254, D.256, Y.271 Ligands: TTE.3 Protein-ligand interaction information (PLIP) not available

1 x CR: CHROMIUM ION(Non-covalent)

CR.2: 3 residues within 4Å: Chain B: D.190, D.192 Ligands: TTE.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.190, B:D.190, B:D.192

1 x TTE: PHOSPHOMETHYL PHOSPHONIC ACID DEOXYTHYMIDYLATE ESTER(Covalent)

TTE.3: 18 residues within 4Å: Chain A: A.4, G.5 Chain B: R.149, G.179, S.180, R.183, S.188, G.189, D.190, D.192, Y.271, F.272, T.273, S.275, D.276, N.279 Ligands: DC-DG-DA-DC-DG-DC-DC.1, CR.2 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:D.276 Hydrogen bonds: B:S.180, B:S.180, B:R.183, B:R.183, B:G.189, B:D.190, B:D.190, B:D.190, B:N.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arndt, J.W. et al., Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes. Biochemistry (2001)

Release Date

2001-04-23

Peptides

DNA POLYMERASE BETA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

DNA POLYMERASE BETA

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