- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 30 x CA: CALCIUM ION(Non-covalent)
CA.2: 3 residues within 4Å:- Chain A: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.65, A:D.102, H2O.1, H2O.21, H2O.155
CA.3: 2 residues within 4Å:- Chain A: N.24
- Ligands: CA.30
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:N.24, H2O.23, H2O.161, H2O.197, H2O.1025
CA.4: 1 residues within 4Å:- Chain A: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.13, H2O.68, H2O.199, H2O.200, H2O.230
CA.5: 3 residues within 4Å:- Chain A: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.139, A:V.150, H2O.38, H2O.194, H2O.222
CA.6: 2 residues within 4Å:- Chain A: D.97, D.102
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.97, A:D.102, H2O.74
CA.11: 3 residues within 4Å:- Chain B: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.65, B:D.102, H2O.277, H2O.297, H2O.431
CA.12: 2 residues within 4Å:- Chain B: N.24
- Ligands: CA.48
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:N.24, H2O.299, H2O.437, H2O.473, H2O.1577
CA.13: 1 residues within 4Å:- Chain B: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.289, H2O.344, H2O.475, H2O.476, H2O.506
CA.14: 3 residues within 4Å:- Chain B: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.139, B:V.150, H2O.314, H2O.470, H2O.498
CA.15: 2 residues within 4Å:- Chain B: D.97, D.102
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.97, B:D.102, H2O.350
CA.20: 3 residues within 4Å:- Chain C: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.65, C:D.102, H2O.553, H2O.573, H2O.707
CA.21: 2 residues within 4Å:- Chain C: N.24
- Ligands: CA.39
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:N.24, H2O.575, H2O.713, H2O.749, H2O.1301
CA.22: 1 residues within 4Å:- Chain C: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.565, H2O.620, H2O.751, H2O.752, H2O.782
CA.23: 3 residues within 4Å:- Chain C: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.139, C:V.150, H2O.590, H2O.746, H2O.774
CA.24: 2 residues within 4Å:- Chain C: D.97, D.102
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.97, C:D.102, H2O.626
CA.29: 3 residues within 4Å:- Chain D: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.65, D:D.102, H2O.829, H2O.849, H2O.983
CA.30: 2 residues within 4Å:- Chain D: N.24
- Ligands: CA.3
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:N.24, H2O.197, H2O.851, H2O.989, H2O.1025
CA.31: 1 residues within 4Å:- Chain D: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.841, H2O.896, H2O.1027, H2O.1028, H2O.1058
CA.32: 3 residues within 4Å:- Chain D: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.139, D:V.150, H2O.866, H2O.1022, H2O.1050
CA.33: 2 residues within 4Å:- Chain D: D.97, D.102
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.97, D:D.102, H2O.902
CA.38: 3 residues within 4Å:- Chain E: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:D.65, E:D.102, H2O.1105, H2O.1125, H2O.1259
CA.39: 2 residues within 4Å:- Chain E: N.24
- Ligands: CA.21
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:N.24, H2O.749, H2O.1127, H2O.1265, H2O.1301
CA.40: 1 residues within 4Å:- Chain E: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.1117, H2O.1172, H2O.1303, H2O.1304, H2O.1334
CA.41: 3 residues within 4Å:- Chain E: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:E.139, E:V.150, H2O.1142, H2O.1298, H2O.1326
CA.42: 2 residues within 4Å:- Chain E: D.97, D.102
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.97, E:D.102, H2O.1178
CA.47: 3 residues within 4Å:- Chain F: D.65, D.70, D.102
5 PLIP interactions:2 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.65, F:D.102, H2O.1381, H2O.1401, H2O.1535
CA.48: 2 residues within 4Å:- Chain F: N.24
- Ligands: CA.12
5 PLIP interactions:1 interactions with chain F, 4 Ligand-Water interactions- Metal complexes: F:N.24, H2O.473, H2O.1403, H2O.1541, H2O.1577
CA.49: 1 residues within 4Å:- Chain F: D.70
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.1393, H2O.1448, H2O.1579, H2O.1580, H2O.1610
CA.50: 3 residues within 4Å:- Chain F: E.139, V.150, K.151
5 PLIP interactions:2 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:E.139, F:V.150, H2O.1418, H2O.1574, H2O.1602
CA.51: 2 residues within 4Å:- Chain F: D.97, D.102
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.97, F:D.102, H2O.1454
- 18 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 3 residues within 4Å:- Chain A: R.88, H.110, S.111
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.9: 5 residues within 4Å:- Chain A: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain B: R.88, H.110, S.111
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain B: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.18: 5 residues within 4Å:- Chain B: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain C: R.88, H.110, S.111
Ligand excluded by PLIPCL.26: 4 residues within 4Å:- Chain C: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain C: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIPCL.34: 3 residues within 4Å:- Chain D: R.88, H.110, S.111
Ligand excluded by PLIPCL.35: 4 residues within 4Å:- Chain D: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.36: 5 residues within 4Å:- Chain D: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIPCL.43: 3 residues within 4Å:- Chain E: R.88, H.110, S.111
Ligand excluded by PLIPCL.44: 4 residues within 4Å:- Chain E: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.45: 5 residues within 4Å:- Chain E: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIPCL.52: 3 residues within 4Å:- Chain F: R.88, H.110, S.111
Ligand excluded by PLIPCL.53: 4 residues within 4Å:- Chain F: P.6, A.7, H.60, F.169
Ligand excluded by PLIPCL.54: 5 residues within 4Å:- Chain F: A.23, C.53, N.54, P.74, T.75
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Samygina, V.R. et al., The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications. J.Mol.Biol. (2001)
- Release Date
- 2001-12-05
- Peptides
- INORGANIC PYROPHOSPHATASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.10 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NA: SODIUM ION(Non-functional Binders)
- 30 x CA: CALCIUM ION(Non-covalent)
- 18 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Samygina, V.R. et al., The structures of Escherichia coli inorganic pyrophosphatase complexed with Ca(2+) or CaPP(i) at atomic resolution and their mechanistic implications. J.Mol.Biol. (2001)
- Release Date
- 2001-12-05
- Peptides
- INORGANIC PYROPHOSPHATASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A