- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CD: CADMIUM ION(Non-covalent)
CD.3: 4 residues within 4Å:- Chain A: D.104, R.105, H.136
- Ligands: ABM.5
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.136
CD.4: 2 residues within 4Å:- Chain A: D.175, D.224
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.175, A:D.224, A:D.224
CD.8: 3 residues within 4Å:- Chain B: R.105, H.136
- Ligands: ABM.10
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.136
CD.9: 2 residues within 4Å:- Chain B: D.175, D.224
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.175, B:D.224, B:D.224
CD.13: 4 residues within 4Å:- Chain C: D.104, R.105, H.136
- Ligands: ABM.15
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.136
CD.14: 2 residues within 4Å:- Chain C: D.175, D.224
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:D.175, C:D.224, C:D.224
CD.18: 3 residues within 4Å:- Chain D: R.105, H.136
- Ligands: ABM.20
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.136
CD.19: 2 residues within 4Å:- Chain D: D.175, D.224
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:D.175, D:D.224, D:D.224
CD.23: 4 residues within 4Å:- Chain E: D.104, R.105, H.136
- Ligands: ABM.25
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:H.136
CD.24: 2 residues within 4Å:- Chain E: D.175, D.224
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:D.175, E:D.224, E:D.224
CD.28: 3 residues within 4Å:- Chain F: R.105, H.136
- Ligands: ABM.30
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:H.136
CD.29: 2 residues within 4Å:- Chain F: D.175, D.224
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.175, F:D.224, F:D.224
- 6 x ABM: METHYL PHOSPHONIC ACID ADENOSINE ESTER(Non-covalent)
ABM.5: 8 residues within 4Å:- Chain A: R.102, Q.103, R.105, H.136
- Chain D: F.41, D.43, E.45
- Ligands: CD.3
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain D- Hydrogen bonds: A:R.102, A:R.102, A:Q.103, A:R.105, D:D.43, D:E.45, D:E.45
- pi-Cation interactions: A:R.102
- pi-Stacking: D:F.41
ABM.10: 10 residues within 4Å:- Chain B: R.102, Q.103, R.105, E.111, H.136
- Chain E: F.41, D.43, E.45, Q.47
- Ligands: CD.8
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain E- Hydrogen bonds: B:R.105, B:E.111, E:D.43
- Water bridges: B:R.102, E:D.43
- pi-Stacking: E:F.41, E:F.41
ABM.15: 8 residues within 4Å:- Chain C: R.102, Q.103, R.105, H.136
- Chain F: F.41, D.43, E.45
- Ligands: CD.13
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain F- Hydrogen bonds: C:R.102, C:R.102, C:Q.103, C:R.105, F:D.43, F:E.45, F:E.45
- pi-Cation interactions: C:R.102
- pi-Stacking: F:F.41
ABM.20: 10 residues within 4Å:- Chain A: F.41, D.43, E.45, Q.47
- Chain D: R.102, Q.103, R.105, E.111, H.136
- Ligands: CD.18
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:D.43, D:R.105, D:E.111
- Water bridges: A:D.43, D:R.102
- pi-Stacking: A:F.41, A:F.41
ABM.25: 8 residues within 4Å:- Chain B: F.41, D.43, E.45
- Chain E: R.102, Q.103, R.105, H.136
- Ligands: CD.23
9 PLIP interactions:5 interactions with chain E, 4 interactions with chain B- Hydrogen bonds: E:R.102, E:R.102, E:Q.103, E:R.105, B:D.43, B:E.45, B:E.45
- pi-Cation interactions: E:R.102
- pi-Stacking: B:F.41
ABM.30: 10 residues within 4Å:- Chain C: F.41, D.43, E.45, Q.47
- Chain F: R.102, Q.103, R.105, E.111, H.136
- Ligands: CD.28
7 PLIP interactions:3 interactions with chain F, 4 interactions with chain C- Hydrogen bonds: F:R.105, F:E.111, C:D.43
- Water bridges: F:R.102, C:D.43
- pi-Stacking: C:F.41, C:F.41
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eriksen, T.A. et al., Binding of cations in Bacillus subtilis phosphoribosyldiphosphate synthetase and their role in catalysis. Protein Sci. (2002)
- Release Date
- 2002-02-06
- Peptides
- RIBOSE-PHOSPHATE PYROPHOSPHOKINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 12 x CD: CADMIUM ION(Non-covalent)
- 6 x ABM: METHYL PHOSPHONIC ACID ADENOSINE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Eriksen, T.A. et al., Binding of cations in Bacillus subtilis phosphoribosyldiphosphate synthetase and their role in catalysis. Protein Sci. (2002)
- Release Date
- 2002-02-06
- Peptides
- RIBOSE-PHOSPHATE PYROPHOSPHOKINASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B