SMTL ID : 1ig3.2 (2 other biounits)

Mouse Thiamin Pyrophosphokinase Complexed with Thiamin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.77, G.78, E.79, R.80, Y.102 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: K.105, K.106 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: D.117, H.118, T.119, T.122, N.160, Q.164 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain A: N.45 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: S.238 Ligands: VIB.10 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: R.151, Q.154 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain A: E.199, G.200, S.201, K.262, S.263 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: Q.46, P.47, G.150 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain A: N.213, H.253 Chain C: P.33, T.34, G.35, K.58 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: E.77, G.78, E.79, R.80, Y.102 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain B: K.105, K.106 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain B: D.117, H.118, T.119, T.122, N.160, Q.164 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: N.45 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: S.238 Ligands: VIB.20 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: R.151, Q.154 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: E.199, G.200, S.201, K.262, S.263 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: Q.46, P.47, G.150 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain B: N.213, H.253 Chain D: P.33, T.34, G.35, K.58 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain C: E.77, G.78, E.79, R.80, Y.102 Ligand excluded by PLIP SO4.22: 7 residues within 4Å: Chain C: D.117, H.118, T.119, T.122, N.160, T.161, Q.164 Ligand excluded by PLIP SO4.23: 1 residues within 4Å: Chain C: N.45 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain C: G.200, S.201, K.262, S.263 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: A.24, R.191, H.193 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain D: E.77, G.78, E.79, R.80, Y.102 Ligand excluded by PLIP SO4.28: 7 residues within 4Å: Chain D: D.117, H.118, T.119, T.122, N.160, T.161, Q.164 Ligand excluded by PLIP SO4.29: 1 residues within 4Å: Chain D: N.45 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain D: G.200, S.201, K.262, S.263 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: A.24, R.191, H.193 Ligand excluded by PLIP

4 x VIB: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM(Non-covalent)

VIB.10: 7 residues within 4Å: Chain A: W.222, L.224, S.236, T.237, S.238, N.239 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.222, A:W.222, A:L.224 VIB.20: 7 residues within 4Å: Chain B: W.222, L.224, S.236, T.237, S.238, N.239 Ligands: SO4.15 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.222, B:W.222, B:L.224 VIB.26: 6 residues within 4Å: Chain C: W.222, L.224, S.236, T.237, S.238, N.239 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.222, C:W.222, C:L.224 Water bridges: C:T.237, C:T.237 VIB.32: 6 residues within 4Å: Chain D: W.222, L.224, S.236, T.237, S.238, N.239 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:W.222, D:W.222, D:L.224 Water bridges: D:T.237, D:T.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timm, D.E. et al., Crystal structure of thiamin pyrophosphokinase. J.Mol.Biol. (2001)

Release Date

2001-04-25

Peptides

thiamin pyrophosphokinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

thiamin pyrophosphokinase

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