SMTL ID : 1ig9.1

Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain C: D.411, L.412, D.623 Ligands: TTP.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.411, C:D.411, C:L.412, C:D.623 CA.2: 4 residues within 4Å: Chain C: D.411, D.623, S.624 Ligands: TTP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.411 CA.3: 3 residues within 4Å: Chain C: D.684, E.686, E.716 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Chain C: E.116 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.116, H2O.9, H2O.11

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.5: 17 residues within 4Å: Chain A: A.3, G.4 Chain B: C.14 Chain C: D.411, T.413, S.414, L.415, Y.416, P.417, R.482, K.486, K.560, N.564, Y.567, D.623 Ligands: CA.1, CA.2 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.416 Hydrogen bonds: C:D.411, C:S.414, C:L.415, C:Y.416, C:N.564 Water bridges: C:K.560 Salt bridges: C:R.482, C:K.486, C:K.560, C:K.560, C:K.560

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franklin, M.C. et al., Structure of the Replicating Complex of a Pol Alpha Family DNA Polymerase. Cell(Cambridge,Mass.) (2001)

Release Date

2001-06-11

Peptides

DNA POLYMERASE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA POLYMERASE

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