- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-BMA-MAN.2: 11 residues within 4Å:- Chain A: E.116, N.120, S.122, Y.123, M.192, F.196
- Chain B: L.214, E.215, Y.218, Q.219, P.246
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.215, B:P.246
- Hydrophobic interactions: A:M.192
NAG-NAG-BMA-BMA-MAN.10: 11 residues within 4Å:- Chain A: L.214, E.215, Y.218, Q.219, P.246
- Chain B: E.116, N.120, S.122, Y.123, M.192, F.196
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.215, A:E.215, A:P.246
- Hydrophobic interactions: B:M.192
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 6 residues within 4Å:- Chain A: Y.378, E.381, Q.382, N.386, M.389, D.392
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.382
NAG-NAG.11: 6 residues within 4Å:- Chain B: Y.378, E.381, Q.382, N.386, M.389, D.392
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.382
- 2 x BGC: beta-D-glucopyranose(Non-covalent)
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.5: 10 residues within 4Å:- Chain A: P.62, I.65, L.69, L.88, L.91, V.92, V.95, R.96, E.500
- Ligands: BOG.6
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:I.65, A:I.65, A:L.69, A:L.88, A:L.91, A:V.92
- Hydrogen bonds: A:P.62
- Water bridges: A:R.96, A:R.96, A:G.447
- Salt bridges: A:R.96
BOG.6: 5 residues within 4Å:- Chain A: Q.20, L.91, N.98, L.99
- Ligands: BOG.5
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.91
- Hydrogen bonds: A:Q.20, A:N.98
- Water bridges: A:Q.20
BOG.13: 10 residues within 4Å:- Chain B: P.62, I.65, L.69, L.88, L.91, V.92, V.95, R.96, E.500
- Ligands: BOG.14
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:I.65, B:I.65, B:L.69, B:L.88, B:L.91, B:V.92
- Hydrogen bonds: B:P.62
- Water bridges: B:R.96, B:R.96, B:G.447, B:E.500
- Salt bridges: B:R.96
BOG.14: 5 residues within 4Å:- Chain B: Q.20, L.91, N.98, L.99
- Ligands: BOG.13
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.91
- Hydrogen bonds: B:Q.20, B:N.98
- Water bridges: B:Q.20
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
COH.7: 18 residues within 4Å:- Chain A: Y.124, A.175, Q.179, H.183, F.186, K.187, T.188, L.271, N.358, Y.361, H.362, W.363, H.364, M.367, I.420, H.422, V.423, D.426
15 PLIP interactions:15 interactions with chain A,- Hydrophobic interactions: A:Q.179, A:L.271, A:W.363, A:I.420, A:V.423
- Hydrogen bonds: A:Y.124, A:T.188, A:T.188, A:N.358, A:D.426
- pi-Stacking: A:H.183, A:H.183, A:H.364, A:H.364
- Metal complexes: A:H.364
COH.15: 18 residues within 4Å:- Chain B: Y.124, A.175, Q.179, H.183, F.186, K.187, T.188, L.271, N.358, Y.361, H.362, W.363, H.364, M.367, I.420, H.422, V.423, D.426
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:Q.179, B:L.271, B:W.363, B:I.420, B:V.423
- Hydrogen bonds: B:T.188, B:T.188, B:T.188, B:N.358, B:D.426, B:D.426
- pi-Stacking: B:H.183, B:H.183, B:H.364, B:H.364
- Metal complexes: B:H.364
- 2 x EIC: LINOLEIC ACID(Non-covalent)
EIC.8: 20 residues within 4Å:- Chain A: V.92, R.96, F.181, F.185, V.204, Y.324, V.325, L.328, Y.331, I.353, F.357, Y.361, W.363, I.499, G.502, A.503, S.506, L.507, G.509, L.510
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:F.181, A:F.181, A:F.185, A:V.204, A:V.325, A:L.328, A:I.353, A:F.357, A:Y.361, A:W.363, A:A.503, A:L.510
- Salt bridges: A:R.96
EIC.16: 20 residues within 4Å:- Chain B: V.92, R.96, F.181, F.185, V.204, Y.324, V.325, L.328, Y.331, I.353, F.357, Y.361, W.363, I.499, G.502, A.503, S.506, L.507, G.509, L.510
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.181, B:F.181, B:F.185, B:V.204, B:V.325, B:L.328, B:I.353, B:F.357, B:Y.361, B:W.363, B:A.503, B:L.510
- Hydrogen bonds: B:Y.331
- Salt bridges: B:R.96
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malkowski, M.G. et al., Structure of eicosapentaenoic and linoleic acids in the cyclooxygenase site of prostaglandin endoperoxide H synthase-1. J.Biol.Chem. (2001)
- Release Date
- 2001-12-12
- Peptides
- Prostaglandin Endoperoxide H Synthase-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG- BMA- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x BGC: beta-D-glucopyranose(Non-covalent)
- 4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
- 2 x EIC: LINOLEIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malkowski, M.G. et al., Structure of eicosapentaenoic and linoleic acids in the cyclooxygenase site of prostaglandin endoperoxide H synthase-1. J.Biol.Chem. (2001)
- Release Date
- 2001-12-12
- Peptides
- Prostaglandin Endoperoxide H Synthase-1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A