SMTL ID : 1ik4.1

X-ray Structure of Methylglyoxal Synthase from E. coli Complexed with Phosphoglycolohydroxamic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x PGH: PHOSPHOGLYCOLOHYDROXAMIC ACID(Non-covalent)

PGH.1: 17 residues within 4Å: Chain A: V.17, A.18, H.19, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 Chain F: R.150 13 PLIP interactions: 2 interactions with chain F, 11 interactions with chain A Water bridges: F:R.150, A:K.23 Salt bridges: F:R.150, A:K.23 Hydrogen bonds: A:A.18, A:T.45, A:T.47, A:T.48, A:T.48, A:S.65, A:G.66, A:D.71, A:H.98 PGH.2: 17 residues within 4Å: Chain B: V.17, A.18, H.19, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 Chain E: R.150 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain E Hydrogen bonds: B:T.45, B:T.47, B:T.48, B:T.48, B:T.48, B:S.65, B:G.66, B:D.71, B:H.98 Salt bridges: B:K.23, E:R.150 Water bridges: E:R.150, E:R.150 PGH.3: 17 residues within 4Å: Chain C: V.17, A.18, H.19, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 Chain D: R.150 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:A.18, C:T.45, C:T.47, C:T.47, C:T.48, C:S.65, C:G.66, C:D.71, C:H.98 Water bridges: C:K.23, D:R.150 Salt bridges: C:K.23, D:R.150 PGH.4: 16 residues within 4Å: Chain C: R.150 Chain D: V.17, A.18, H.19, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 13 PLIP interactions: 10 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:T.45, D:T.47, D:T.47, D:T.48, D:T.48, D:T.48, D:S.65, D:G.66, D:H.98 Salt bridges: D:K.23, C:R.150 Water bridges: C:R.150, C:R.150 PGH.5: 17 residues within 4Å: Chain B: R.150 Chain E: V.17, A.18, H.19, D.20, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 12 PLIP interactions: 2 interactions with chain B, 10 interactions with chain E Water bridges: B:R.150, E:K.23 Salt bridges: B:R.150, E:K.23 Hydrogen bonds: E:A.18, E:T.45, E:T.47, E:T.48, E:S.65, E:G.66, E:D.71, E:H.98 PGH.6: 16 residues within 4Å: Chain A: R.150 Chain F: V.17, A.18, H.19, K.23, T.45, G.46, T.47, T.48, S.65, G.66, P.67, D.71, F.88, H.98, V.102 11 PLIP interactions: 8 interactions with chain F, 3 interactions with chain A Hydrogen bonds: F:T.45, F:T.47, F:T.48, F:T.48, F:S.65, F:G.66, F:H.98 Salt bridges: F:K.23, A:R.150 Water bridges: A:R.150, A:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marks, G.T. et al., Mechanistic implications of methylglyoxal synthase complexed with phosphoglycolohydroxamic acid as observed by X-ray crystallography and NMR spectroscopy. Biochemistry (2001)

Release Date

2001-09-26

Peptides

METHYLGLYOXAL SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

METHYLGLYOXAL SYNTHASE

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