SMTL ID : 1iqr.1

Crystal structure of DNA photolyase from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.9, G.10, S.96, T.98, R.104 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.10, A:S.96, A:T.98, A:T.98 Water bridges: A:R.9, A:D.11 Salt bridges: A:R.9, A:R.104

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 28 residues within 4Å: Chain A: Y.197, G.209, S.210, R.211, L.212, S.213, F.216, W.241, E.244, L.245, W.247, R.248, F.307, L.308, S.309, N.310, R.313, M.314, A.317, L.339, D.341, G.342, D.343, V.346, N.347, Q.349, G.350, W.351 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:R.313, A:M.314, A:A.317 Hydrogen bonds: A:Y.197, A:S.210, A:R.211, A:L.212, A:S.213, A:S.213, A:E.244, A:R.248, A:R.248, A:N.310, A:N.310, A:R.313, A:D.341, A:D.341, A:D.343 Water bridges: A:G.209, A:N.310, A:Q.349, A:Q.349 pi-Cation interactions: A:R.313, A:R.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komori, H. et al., Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-11-28

Peptides

photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

photolyase

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