SMTL ID : 1is2.1

Crystal Structure of Peroxisomal Acyl-CoA Oxidase-II from Rat Liver

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 28 residues within 4Å: Chain A: L.102, Q.138, T.139, G.144, T.145, W.176, P.177, G.178, N.237, P.416, T.419, F.420, E.423, T.425, V.426 Chain B: R.307, Q.309, S.310, I.321, F.324, T.326, Q.327, K.330, A.395, G.397, G.398, H.399, Y.401 33 PLIP interactions: 15 interactions with chain B, 18 interactions with chain A Hydrophobic interactions: B:Y.401, B:Y.401, A:W.176, A:W.176, A:W.176, A:P.416 Hydrogen bonds: B:S.310, B:S.310, B:T.326, B:Q.327, B:K.330, B:A.395, B:G.398, B:H.399, B:H.399, A:Q.138, A:T.139, A:T.139, A:T.145, A:G.178, A:N.237, A:E.423, A:E.423 Water bridges: B:R.307, A:T.139, A:G.144, A:G.422, A:T.425 Salt bridges: B:R.307, B:R.307 pi-Stacking: B:F.324, A:W.176, A:F.420 FAD.2: 29 residues within 4Å: Chain A: R.307, Q.309, S.310, I.321, F.324, T.326, Q.327, K.330, A.395, G.397, G.398, Y.401 Chain B: L.102, Q.138, T.139, G.144, T.145, W.176, P.177, G.178, Y.232, N.237, P.416, T.419, F.420, E.423, T.425, V.426, L.429 28 PLIP interactions: 15 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:W.176, B:W.176, B:Y.232, B:P.416, A:Y.401, A:Y.401 Hydrogen bonds: B:Q.138, B:T.139, B:T.139, B:T.145, B:T.145, B:G.178, B:N.237, B:E.423, A:S.310, A:S.310, A:Q.327, A:A.395, A:G.398 Water bridges: B:H.143, A:R.307, A:E.311, A:T.326 pi-Stacking: B:W.176, B:F.420, A:F.324 Salt bridges: A:R.307, A:R.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, Y. et al., Three-dimensional structure of the flavoenzyme acyl-CoA oxidase-II from rat liver, the peroxisomal counterpart of mitochondrial acyl-CoA dehydrogenase. J.Biochem. (2002)

Release Date

2002-04-10

Peptides

acyl-CoA oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

acyl-CoA oxidase

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