SMTL ID : 2ddh.1

Crystal Structure of Acyl-CoA oxidase complexed with 3-OH-dodecanoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 29 residues within 4Å: Chain A: L.102, Q.138, T.139, G.144, T.145, W.176, P.177, G.178, Y.232, N.237, P.416, T.419, F.420, E.423, T.425, V.426 Chain B: R.307, Q.309, S.310, I.321, F.324, T.326, Q.327, K.330, A.395, G.397, G.398, Y.401 Ligands: HXD.2 30 PLIP interactions: 16 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:Y.401, B:Y.401, A:W.176, A:W.176, A:Y.232, A:P.416 Hydrogen bonds: B:S.310, B:S.310, B:T.326, B:Q.327, B:K.330, B:A.395, B:G.398, A:Q.138, A:T.139, A:T.139, A:T.139, A:T.145, A:T.145, A:G.178, A:N.237, A:E.423 Water bridges: B:R.307, B:R.307, B:R.307, B:H.399, A:Y.136 Salt bridges: B:R.307, B:R.307 pi-Stacking: B:F.324 FAD.3: 29 residues within 4Å: Chain A: R.307, Q.309, S.310, I.321, F.324, T.326, Q.327, K.330, A.395, G.397, G.398, Y.401 Chain B: L.102, Q.138, T.139, G.144, T.145, W.176, P.177, G.178, Y.232, N.237, P.416, T.419, F.420, E.423, T.425, V.426 Ligands: HXD.4 32 PLIP interactions: 17 interactions with chain A, 15 interactions with chain B Hydrophobic interactions: A:Y.401, A:Y.401, B:W.176, B:W.176, B:Y.232, B:P.416 Hydrogen bonds: A:S.310, A:S.310, A:Q.327, A:K.330, A:A.395, A:G.398, B:Q.138, B:T.139, B:T.139, B:T.139, B:T.145, B:T.145, B:G.178, B:N.237, B:E.423, B:T.425 Water bridges: A:R.307, A:R.307, A:R.307, A:T.326, A:H.399, A:H.399, B:Y.136 Salt bridges: A:R.307, A:R.307 pi-Stacking: A:F.324

2 x HXD: (3R)-3-HYDROXYDODECANOIC ACID(Non-covalent)

HXD.2: 7 residues within 4Å: Chain A: D.101, Q.138, F.284, L.285, F.420, E.421 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.284, A:L.285, A:F.420, A:F.420, A:E.421 Hydrogen bonds: A:E.421, A:E.421 HXD.4: 7 residues within 4Å: Chain B: D.101, Q.138, F.284, L.285, F.420, E.421 Ligands: FAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.284, B:L.285, B:F.420, B:F.420, B:E.421 Hydrogen bonds: B:E.421, B:E.421, B:E.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokuoka, K. et al., Three-Dimensional Structure of Rat-Liver Acyl-CoA Oxidase in Complex with a Fatty Acid: Insights into Substrate-Recognition and Reactivity toward Molecular Oxygen. J.Biochem.(Tokyo) (2006)

Release Date

2006-03-28

Peptides

Acyl-CoA oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Acyl-CoA oxidase

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