SMTL ID : 1iwa.1

RUBISCO FROM GALDIERIA PARTITA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-oligomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: K.184, K.342, S.387, G.388, G.389, Q.409, G.411, G.412 Chain I: T.74, W.75 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain I Hydrogen bonds: A:G.388, A:G.389, A:G.411, A:G.412, I:T.74 Water bridges: A:T.182, A:K.184, A:K.184 Salt bridges: A:K.184, A:K.342 SO4.2: 9 residues within 4Å: Chain C: K.184, K.342, S.387, G.388, G.389, G.411, G.412 Chain O: T.74, W.75 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain O Hydrogen bonds: C:G.388, C:G.389, C:G.411, C:G.412, O:T.74, O:W.75 Salt bridges: C:K.184, C:K.342 SO4.3: 7 residues within 4Å: Chain E: K.184, K.342, G.389, G.411, G.412 Chain M: T.74, W.75 11 PLIP interactions: 8 interactions with chain E, 3 interactions with chain M Hydrogen bonds: E:G.388, E:G.389, E:G.411, E:G.412, M:T.74, M:W.75 Water bridges: E:K.342, E:G.413, M:E.69 Salt bridges: E:K.184, E:K.342 SO4.4: 11 residues within 4Å: Chain G: K.184, K.342, S.387, G.388, G.389, Q.409, F.410, G.411, G.412 Chain K: T.74, W.75 9 PLIP interactions: 7 interactions with chain G, 2 interactions with chain K Hydrogen bonds: G:S.387, G:G.389, G:G.411, G:G.412, K:T.74, K:W.75 Water bridges: G:G.413 Salt bridges: G:K.184, G:K.342 SO4.5: 8 residues within 4Å: Chain A: T.74, W.75 Chain I: K.184, K.342, G.388, G.389, G.411, G.412 14 PLIP interactions: 12 interactions with chain I, 2 interactions with chain A Hydrogen bonds: I:G.388, I:G.389, I:G.411, I:G.412, A:T.74, A:T.74 Water bridges: I:K.184, I:K.342, I:S.387, I:I.390, I:I.390, I:I.390 Salt bridges: I:K.184, I:K.342 SO4.6: 8 residues within 4Å: Chain E: T.74, W.75 Chain M: K.184, K.342, G.388, G.389, G.411, G.412 13 PLIP interactions: 12 interactions with chain M, 1 interactions with chain E Hydrogen bonds: M:G.388, M:G.389, M:G.411, M:G.412, E:T.74 Water bridges: M:T.182, M:K.186, M:K.186, M:I.390, M:I.390, M:I.390 Salt bridges: M:K.184, M:K.342 SO4.7: 9 residues within 4Å: Chain C: T.74, W.75 Chain O: K.184, K.342, G.388, G.389, Q.409, G.411, G.412 16 PLIP interactions: 14 interactions with chain O, 2 interactions with chain C Hydrogen bonds: O:G.388, O:G.389, O:G.411, O:G.412, C:T.74, C:W.75 Water bridges: O:T.182, O:T.182, O:K.186, O:K.342, O:K.342, O:I.390, O:I.390, O:G.413 Salt bridges: O:K.184, O:K.342 SO4.8: 9 residues within 4Å: Chain G: T.74, W.75 Chain K: K.184, K.342, S.387, G.388, G.389, G.411, G.412 9 PLIP interactions: 8 interactions with chain K, 1 interactions with chain G Hydrogen bonds: K:G.388, K:G.389, K:G.411, K:G.412, G:T.74 Water bridges: K:S.387, K:G.388 Salt bridges: K:K.184, K:K.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okano, Y. et al., X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site. FEBS LETT. (2002)

Release Date

2003-04-30

Peptides

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit: ACEGIKMO
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

M
M

O
O

B
B

D
D

F
F

H
H

J
J

L
L

N
N

P
P

ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit

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