SMTL ID : 1iz8.1

Re-refinement of the structure of hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BR: BROMIDE ION(Non-covalent)

BR.1: 6 residues within 4Å: Chain A: N.37, W.108, F.168, W.206, P.207, I.210 Ligand excluded by PLIP

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: P.174, I.177 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.174, A:I.177, H2O.1, H2O.2 CA.3: 1 residues within 4Å: Chain A: D.29 No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain A: D.148, Q.151 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.148, H2O.1, H2O.5, H2O.11

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.5: 7 residues within 4Å: Chain A: D.107, P.143, F.150, L.176, A.246, L.247, H.271 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.150, A:L.176 Hydrogen bonds: A:D.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Streltsov, V.A. et al., Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry (2003)

Release Date

2002-10-16

Peptides

HALOALKANE DEHALOGENASE, LINB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HALOALKANE DEHALOGENASE, LINB

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