SMTL ID : 1j20.1

Crystal Structure of Thermus thermophilus HB8 Argininosuccinate Synthetase in complex with product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.8, G.10, L.11, D.12, T.13 Ligands: AMP.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.8, A:G.10, A:G.10, A:T.13 Water bridges: A:G.114 SO4.2: 6 residues within 4Å: Chain B: S.8, G.10, L.11, D.12, T.13 Ligands: AMP.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.8, B:G.10, B:G.10, B:D.12, B:T.13 Water bridges: B:L.11 SO4.3: 5 residues within 4Å: Chain C: S.8, G.10, D.12, T.13 Ligands: AMP.7 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.8, C:G.10, C:G.10, C:T.13 Water bridges: C:L.11 SO4.4: 5 residues within 4Å: Chain D: S.8, G.10, D.12, T.13 Ligands: AMP.8 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.8, D:G.10, D:G.10, D:D.12, D:T.13 Water bridges: D:L.11, D:L.11

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.5: 18 residues within 4Å: Chain A: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, A.115, D.121, F.125, M.174, D.175 Ligands: SO4.1, AS1.9 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.33, A:A.33, A:R.92, A:G.114, A:D.121, A:M.174, A:D.175 Water bridges: A:G.114, A:W.142 Salt bridges: A:R.92 AMP.6: 14 residues within 4Å: Chain B: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, H.113, G.114, A.115, F.125 Ligands: SO4.2, AS1.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.33, B:A.33, B:R.92, B:G.114 Salt bridges: B:R.92 AMP.7: 17 residues within 4Å: Chain C: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, D.121, F.125, M.174, D.175 Ligands: SO4.3, AS1.11 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:A.33, C:A.33, C:R.92, C:G.114, C:M.174 Salt bridges: C:R.92 AMP.8: 17 residues within 4Å: Chain D: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, D.121, F.125, M.174, D.175 Ligands: SO4.4, AS1.12 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:A.33, D:A.33, D:R.92, D:G.114, D:M.174 Salt bridges: D:R.92

4 x AS1: ARGININOSUCCINATE(Non-covalent)

AS1.9: 17 residues within 4Å: Chain A: Y.84, T.88, S.89, A.115, T.116, G.119, N.120, D.121, R.124, D.175, S.182, E.184, E.258, R.260, Y.270, Y.310 Ligands: AMP.5 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:T.88, A:Y.270 Hydrogen bonds: A:Y.84, A:S.89, A:T.116, A:N.120, A:N.120, A:D.121, A:D.121, A:D.121, A:Y.270, A:Y.310 Water bridges: A:G.119, A:Q.122, A:S.182, A:E.184, A:Y.270 Salt bridges: A:D.121, A:R.124, A:E.184, A:R.260 AS1.10: 16 residues within 4Å: Chain B: Y.84, T.88, S.89, A.115, T.116, G.119, N.120, D.121, R.124, S.182, E.184, E.258, R.260, Y.270, Y.310 Ligands: AMP.6 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:T.88, B:Y.270 Hydrogen bonds: B:Y.84, B:S.89, B:R.92, B:T.116, B:N.120, B:N.120, B:D.121, B:D.121, B:D.121, B:Y.270, B:Y.270, B:Y.310 Water bridges: B:G.119, B:G.119, B:S.182, B:R.260, B:S.266 Salt bridges: B:D.121, B:R.124, B:E.184, B:R.260 AS1.11: 16 residues within 4Å: Chain C: Y.84, T.88, S.89, A.115, T.116, G.119, N.120, D.121, R.124, S.182, E.184, E.258, R.260, Y.270, Y.310 Ligands: AMP.7 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:T.88, C:Y.270 Hydrogen bonds: C:S.89, C:R.92, C:T.116, C:G.119, C:N.120, C:N.120, C:D.121, C:D.121, C:Y.270, C:Y.310 Water bridges: C:T.116, C:Q.122, C:S.182, C:S.266, C:Y.270 Salt bridges: C:D.121, C:R.124, C:E.184, C:R.260 AS1.12: 16 residues within 4Å: Chain D: Y.84, T.88, S.89, A.115, T.116, G.119, N.120, D.121, R.124, S.182, E.184, E.258, R.260, Y.270, Y.310 Ligands: AMP.8 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:T.88, D:Y.270 Hydrogen bonds: D:S.89, D:T.116, D:N.120, D:N.120, D:D.121, D:D.121, D:Y.270, D:Y.270, D:Y.310 Water bridges: D:T.116, D:T.116, D:G.119, D:Q.122, D:S.182, D:E.184 Salt bridges: D:D.121, D:R.124, D:E.184, D:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto, M. et al., Structures of argininosuccinate synthetase in enzyme-ATP-substrates and enzyme-AMP-product forms. J.Biol.Chem. (2003)

Release Date

2003-04-22

Peptides

Argininosuccinate Synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Argininosuccinate Synthetase

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