SMTL ID : 1j78.2 (1 other biounit)

Crystallographic analysis of the human vitamin D binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 5 residues within 4Å: Chain A: K.347, V.348, P.351, T.352, E.379 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.347, A:P.351, A:P.351, A:E.379 OLA.2: 6 residues within 4Å: Chain A: Q.153, Y.207, A.208, Y.210, C.250, E.251 No protein-ligand interaction detected (PLIP)

1 x VDY: 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL(Non-covalent)

VDY.3: 10 residues within 4Å: Chain A: E.8, V.12, F.24, L.31, Y.32, K.35, L.47, Y.68, S.76, M.107 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.24, A:L.47, A:M.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verboven, C. et al., A structural basis for the unique binding features of the human vitamin D-binding protein. Nat.Struct.Biol. (2002)

Release Date

2002-02-06

Peptides

vitamin D binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

vitamin D binding protein

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