SMTL ID : 1j7e.2 (1 other biounit)

A Structural Basis for the Unique Binding Features of the Human Vitamin D-binding Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x JY: 3-(2-{4-[2-(5-HYDROXY-2-METHYLENE-CYCLOHEXYLIDENE)-ETHYLIDENE]-7A-METHYL-OCTAHYDRO-INDEN-1-YL}-PROPYL)-PHENOL(Non-covalent)

JY.1: 14 residues within 4Å: Chain A: E.8, V.12, E.15, F.24, L.27, S.28, L.31, Y.32, F.36, L.47, Y.68, S.76, S.79, M.107 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.12, A:F.24, A:F.24, A:Y.32, A:F.36, A:L.47 Hydrogen bonds: A:S.79

2 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 4 residues within 4Å: Chain A: V.348, P.351, E.379, F.383 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.351, A:E.379, A:F.383 Hydrogen bonds: A:E.379 OLA.3: 8 residues within 4Å: Chain A: Y.207, A.208, A.209, Y.210, K.214, C.250, L.444, D.447 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.210, A:K.214

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Verboven, C. et al., A structural basis for the unique binding features of the human vitamin D-binding protein. Nat.Struct.Biol. (2002)

Peptides

vitamin D binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

vitamin D binding protein

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