SMTL ID : 1jaf.1

CRYSTAL STRUCTURE OF CYTOCHROME C' FROM RHODOCYCLUS GELATINOSUS AT 2.5 ANGSTOMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.1: 20 residues within 4Å: Chain A: R.12, Q.13, F.16, T.17, I.19, A.20, F.59, T.69, E.70, A.71, F.82, A.85, A.86, F.89, A.118, C.119, C.122, H.123, F.126, K.127 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.16, A:F.16, A:F.16, A:F.16, A:I.19, A:F.59, A:A.71, A:F.82, A:A.85, A:A.86, A:F.89, A:F.89, A:K.127 Hydrogen bonds: A:Q.13, A:T.17, A:T.69, A:E.70, A:A.71 Water bridges: A:T.17 Salt bridges: A:R.12 Metal complexes: A:H.123 HEM.2: 19 residues within 4Å: Chain B: R.12, Q.13, F.16, T.17, I.19, A.20, F.59, T.69, E.70, A.71, F.82, A.85, A.86, F.89, C.119, C.122, H.123, F.126, K.127 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:F.16, B:F.16, B:F.16, B:I.19, B:F.59, B:F.82, B:A.85, B:F.89, B:F.89 Hydrogen bonds: B:Q.13, B:T.17, B:T.69, B:E.70, B:A.71 Water bridges: B:E.70, A:E.10 Salt bridges: B:R.12 Metal complexes: B:H.123 HEM.3: 20 residues within 4Å: Chain C: R.12, Q.13, F.16, T.17, I.19, A.20, F.59, T.69, E.70, A.71, F.82, A.85, A.86, F.89, A.118, C.119, C.122, H.123, F.126, K.127 21 PLIP interactions: 20 interactions with chain C, 1 interactions with chain D, Hydrophobic interactions: C:F.16, C:F.16, C:F.16, C:F.16, C:I.19, C:F.59, C:A.71, C:F.82, C:A.85, C:A.86, C:F.89, C:F.89, C:K.127 Hydrogen bonds: C:Q.13, C:T.17, C:E.70, C:E.70, C:A.71 Salt bridges: C:R.12 Metal complexes: C:H.123 Water bridges: D:E.10 HEM.4: 19 residues within 4Å: Chain D: R.12, Q.13, F.16, T.17, I.19, A.20, F.59, T.69, E.70, A.71, F.82, A.85, A.86, F.89, C.119, C.122, H.123, F.126, K.127 16 PLIP interactions: 16 interactions with chain D, Hydrophobic interactions: D:F.16, D:F.16, D:F.16, D:I.19, D:F.59, D:F.82, D:A.85, D:F.89, D:F.89 Hydrogen bonds: D:Q.13, D:T.17, D:E.70, D:A.71 Water bridges: D:T.17 Salt bridges: D:R.12 Metal complexes: D:H.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Archer, M. et al., Crystal Structure of Cytochrome C' from Rhodocyclus Gelatinosus and Comparison with Other Cytochromes C. J.Biol.Inorg.Chem. (1997)

Release Date

1998-01-21

Peptides

CYTOCHROME C': ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

CYTOCHROME C'

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