SMTL ID : 1jcq.1

CRYSTAL STRUCTURE OF HUMAN PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH FARNESYL DIPHOSPHATE AND THE PEPTIDOMIMETIC INHIBITOR L-739,750

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:A.230, B:W.235, B:N.269, B:N.269, B:S.272, A:Q.285, A:D.286, B:Q.233, A:Y.241, A:G.282, A:Q.285 Water bridges: A:D.286, B:W.235, A:D.286

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: W.169, H.170, R.173, Q.204 Chain B: E.198 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:H.170 Hydrogen bonds: A:Q.204 Water bridges: A:H.170, A:R.173, A:R.173, A:R.173, A:Q.204, B:V.199, B:V.199, B:V.199 Salt bridges: A:H.170, A:R.173

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: 739.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.4: 15 residues within 4Å: Chain A: K.164, Y.166, Y.200 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 Ligands: 739.5 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.205, B:W.303, A:Y.200 Water bridges: B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:L.295, B:Y.300, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x 739: 2(S)-{2(S)-[2(R)-AMINO-3-MERCAPTO]PROPYLAMINO-3(S)-METHYL}PENTYLOXY-3-PHENYLPROPIONYLMETHIONINE SULFONE(Non-covalent)

739.5: 19 residues within 4Å: Chain A: Y.131, K.164, Y.166, Q.167, H.201 Chain B: A.98, S.99, W.102, W.106, A.151, P.152, R.202, D.297, C.299, Y.300, Y.361, H.362 Ligands: ZN.3, FPP.4 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Y.166, B:W.106, B:W.106 Hydrogen bonds: A:Q.167, B:R.202 Water bridges: A:Y.166, B:Y.300 pi-Stacking: B:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Long, S.B. et al., The crystal structure of human protein farnesyltransferase reveals the basis for inhibition by CaaX tetrapeptides and their mimetics. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-11-02

Peptides

PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT: A
PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN FARNESYLTRANSFERASE, ALPHA SUBUNIT

PROTEIN FARNESYLTRANSFERASE, BETA SUBUNIT

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