SMTL ID : 3e37.1 (2 other biounits)

Protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 12 residues within 4Å: Chain A: Y.241, G.282, Q.285, D.286 Chain B: A.230, R.231, Q.233, N.234, W.235, G.237, N.269, S.272 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.230, B:N.269, B:N.269, B:S.272, A:Q.285, A:D.286, A:G.282, A:Q.285, B:Q.233 Water bridges: B:K.271, A:D.286, B:W.235

1 x ED5: tert-butyl 4-({(2-{(4-cyanophenyl)[(1-methyl-1H-imidazol-5-yl)methyl]amino}ethyl)[(2-methylphenyl)sulfonyl]amino}methyl)piperidine-1-carboxylate(Non-covalent)

ED5.2: 21 residues within 4Å: Chain A: Y.166 Chain B: L.96, W.102, W.106, A.151, Y.154, R.202, Y.205, C.206, G.250, Y.251, C.254, D.297, C.299, Y.300, W.303, D.352, D.359, Y.361, H.362 Ligands: ZN.3 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.102, B:W.106, B:Y.154, B:Y.205, B:W.303, B:Y.361 Hydrogen bonds: B:Y.361, A:Y.166 Water bridges: B:Y.300, B:F.360 pi-Stacking: B:H.248, B:Y.251, B:Y.361

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: ED5.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hast, M.A. et al., Structural basis for binding and selectivity of antimalarial and anticancer ethylenediamine inhibitors to protein farnesyltransferase. Chem.Biol. (2009)

Release Date

2009-03-10

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Protein farnesyltransferase subunit beta

Related Entries With Identical Sequence