SMTL ID : 1jhx.1

Three-dimensional Structure of CobT in Complex with Phenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: G.264, F.265, L.266, S.291, R.314, L.315, G.316 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.263, A:F.265, A:L.266, A:S.291 Water bridges: A:E.174, A:S.267, A:E.293, A:R.314, A:G.316, A:G.316 PO4.2: 7 residues within 4Å: Chain A: A.78, M.177, A.178, N.179, T.180, G.202, A.203 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.178, A:A.178, A:T.180, A:A.203 Water bridges: A:S.80, A:T.181, A:A.203 Salt bridges: A:K.213 PO4.4: 7 residues within 4Å: Chain B: G.264, F.265, L.266, S.291, R.314, L.315, G.316 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:D.263, B:F.265, B:L.266, B:S.291 Water bridges: B:E.174, B:S.267, B:E.293, B:R.314, B:G.316, B:G.316 PO4.5: 7 residues within 4Å: Chain B: A.78, M.177, A.178, N.179, T.180, G.202, A.203 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:A.178, B:A.178, B:T.180, B:A.203 Water bridges: B:S.80, B:T.181, B:A.203 Salt bridges: B:K.213

2 x IPH: PHENOL(Non-covalent)

IPH.3: 9 residues within 4Å: Chain A: S.80, V.84, Q.88, L.175, M.177, L.315, E.317 Chain B: K.31, P.32 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.84, A:Q.88, B:P.32 Hydrogen bonds: A:Q.88, A:E.317 IPH.6: 9 residues within 4Å: Chain A: K.31, P.32 Chain B: S.80, V.84, Q.88, L.175, M.177, L.315, E.317 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:P.32, B:V.84, B:Q.88 Hydrogen bonds: B:Q.88, B:E.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheong, C.G. et al., Structural investigation of the biosynthesis of alternative lower ligands for cobamides by nicotinate mononucleotide: 5,6-dimethylbenzimidazole phosphoribosyltransferase from Salmonella enterica. J.Biol.Chem. (2001)

Release Date

2001-10-18

Peptides

Nicotinate Mononucleotide:5,6-Dimethylbenzimidazole Phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nicotinate Mononucleotide:5,6-Dimethylbenzimidazole Phosphoribosyltransferase

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