- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NH4: AMMONIUM ION(Non-functional Binders)
- 4 x DG6: 2-DEOXY-GLUCITOL-6-PHOSPHATE(Non-covalent)
DG6.2: 15 residues within 4Å:- Chain A: D.320, S.323, Q.325, T.326, N.350, D.356, G.357, L.360, K.369, I.402, K.412, D.438, K.489
- Ligands: NH4.1, NAI.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:K.369
- Hydrogen bonds: A:S.323, A:T.326, A:N.350, A:K.369, A:K.412, A:K.412, A:K.489
- Salt bridges: A:K.369
DG6.5: 15 residues within 4Å:- Chain B: S.323, Q.325, T.326, L.352, N.354, D.356, G.357, L.360, K.369, I.402, K.412, D.438, K.489
- Ligands: NH4.4, NAI.6
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:S.323, B:S.323, B:Q.325, B:T.326, B:D.356, B:K.412, B:K.412, B:D.438, B:K.489
- Water bridges: B:N.246, B:T.326
- Salt bridges: B:K.369
DG6.8: 15 residues within 4Å:- Chain C: D.320, S.323, Q.325, T.326, N.350, D.356, G.357, L.360, K.369, I.402, K.412, D.438, K.489
- Ligands: NH4.7, NAI.9
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:K.369
- Hydrogen bonds: C:S.323, C:N.350, C:K.369, C:K.412, C:K.412, C:K.489
- Salt bridges: C:K.369
DG6.11: 15 residues within 4Å:- Chain D: S.323, Q.325, T.326, L.352, N.354, D.356, G.357, L.360, K.369, I.402, K.412, D.438, K.489
- Ligands: NH4.10, NAI.12
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:S.323, D:S.323, D:Q.325, D:T.326, D:T.326, D:K.412, D:K.412, D:K.489
- Water bridges: D:T.247
- Salt bridges: D:K.369
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 31 residues within 4Å:- Chain A: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, T.244, A.245, N.246, T.247, G.295, S.296, P.297, D.320, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442
- Ligands: NH4.1, DG6.2
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:L.321, A:A.442
- Hydrogen bonds: A:G.74, A:N.76, A:N.76, A:N.77, A:I.149, A:S.184, A:I.185, A:R.198, A:R.198, A:T.244, A:A.245, A:N.246, A:N.246, A:T.247, A:D.320, A:N.354, A:N.355, A:D.356, A:D.356, A:K.369, A:D.410
- Water bridges: A:G.75, A:G.78, A:D.356
- Salt bridges: A:R.198
NAI.6: 31 residues within 4Å:- Chain B: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442
- Ligands: NH4.4, DG6.5
26 PLIP interactions:26 interactions with chain B- Hydrophobic interactions: B:A.442
- Hydrogen bonds: B:G.72, B:N.76, B:N.76, B:N.77, B:N.77, B:I.149, B:S.184, B:I.185, B:R.198, B:R.198, B:T.244, B:A.245, B:N.246, B:N.246, B:T.247, B:T.247, B:D.356, B:D.356, B:K.369, B:D.410
- Water bridges: B:G.75, B:G.78, B:Y.187, B:R.198
- Salt bridges: B:R.198
NAI.9: 31 residues within 4Å:- Chain C: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, T.244, A.245, N.246, T.247, G.295, S.296, P.297, D.320, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442
- Ligands: NH4.7, DG6.8
26 PLIP interactions:26 interactions with chain C- Hydrophobic interactions: C:L.321, C:A.442
- Hydrogen bonds: C:G.74, C:N.76, C:N.77, C:N.77, C:I.149, C:S.184, C:I.185, C:R.198, C:R.198, C:A.245, C:N.246, C:N.246, C:T.247, C:T.247, C:D.320, C:N.355, C:D.356, C:D.356, C:K.369, C:D.410
- Water bridges: C:G.75, C:G.78, C:D.356
- Salt bridges: C:R.198
NAI.12: 31 residues within 4Å:- Chain D: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442
- Ligands: NH4.10, DG6.11
26 PLIP interactions:26 interactions with chain D- Hydrophobic interactions: D:A.442
- Hydrogen bonds: D:G.72, D:N.76, D:N.76, D:N.77, D:N.77, D:I.149, D:S.184, D:I.185, D:R.198, D:R.198, D:A.245, D:N.246, D:N.246, D:T.247, D:T.247, D:T.247, D:D.356, D:D.356, D:K.369, D:D.410
- Water bridges: D:G.75, D:G.78, D:Y.187, D:R.198
- Salt bridges: D:R.198
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stein, A.J. et al., The crystal structure and mechanism of 1-L-myo-inositol- 1-phosphate synthase. J.Biol.Chem. (2002)
- Release Date
- 2002-04-10
- Peptides
- myo-inositol-1-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NH4: AMMONIUM ION(Non-functional Binders)
- 4 x DG6: 2-DEOXY-GLUCITOL-6-PHOSPHATE(Non-covalent)
- 4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stein, A.J. et al., The crystal structure and mechanism of 1-L-myo-inositol- 1-phosphate synthase. J.Biol.Chem. (2002)
- Release Date
- 2002-04-10
- Peptides
- myo-inositol-1-phosphate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B