SMTL ID : 1jmu.1

Crystal Structure of the Reovirus mu1/sigma3 Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-3-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain C: S.34 Chain E: S.34 Ligand excluded by PLIP

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 11 residues within 4Å: Chain A: V.12 Chain B: V.174, L.177, D.178, I.187, R.188, P.191, A.194, A.195, L.198, W.207 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.177, B:A.194, B:A.195, B:L.198, B:W.207 Hydrogen bonds: B:R.188, B:R.188 BOG.4: 11 residues within 4Å: Chain C: V.12 Chain D: V.174, L.177, D.178, I.187, R.188, P.191, A.194, A.195, L.198, W.207 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.177, D:A.194, D:A.195, D:L.198, D:W.207 Hydrogen bonds: D:R.188, D:R.188 BOG.6: 11 residues within 4Å: Chain E: V.12 Chain F: V.174, L.177, D.178, I.187, R.188, P.191, A.194, A.195, L.198, W.207 8 PLIP interactions: 7 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:L.177, F:A.194, F:A.195, F:L.198, F:W.207, E:V.12 Hydrogen bonds: F:R.188, F:R.188

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain B: K.297, T.298, M.299, G.300, T.301, G.321 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.298, B:M.299, B:G.300, B:T.301, B:G.321 SO4.5: 6 residues within 4Å: Chain D: K.297, T.298, M.299, G.300, T.301, G.321 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.298, D:M.299, D:G.300, D:T.301, D:G.321 SO4.7: 6 residues within 4Å: Chain F: K.297, T.298, M.299, G.300, T.301, G.321 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:T.298, F:M.299, F:G.300, F:T.301, F:G.321 SO4.9: 3 residues within 4Å: Chain G: Q.40, R.79, H.80 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:Q.40, G:H.80 Water bridges: G:Q.81 SO4.10: 3 residues within 4Å: Chain G: R.313, G.319, G.320 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:G.319, G:G.320 Salt bridges: G:R.313 SO4.12: 3 residues within 4Å: Chain H: Q.40, R.79, H.80 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:Q.40, H:H.80 Water bridges: H:Q.40, H:Q.81 SO4.13: 3 residues within 4Å: Chain H: R.313, G.319, G.320 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:G.319, H:G.320 Water bridges: H:R.313, H:R.313 Salt bridges: H:R.313 SO4.15: 3 residues within 4Å: Chain I: Q.40, R.79, H.80 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:Q.40, I:H.80 SO4.16: 3 residues within 4Å: Chain I: R.313, G.319, G.320 5 PLIP interactions: 5 interactions with chain I Hydrogen bonds: I:G.319, I:G.320 Water bridges: I:R.313, I:R.313 Salt bridges: I:R.313

3 x ZN: ZINC ION(Non-covalent)

ZN.8: 4 residues within 4Å: Chain G: C.52, C.55, H.72, C.74 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.52, G:C.55, G:H.72, G:C.74 ZN.11: 4 residues within 4Å: Chain H: C.52, C.55, H.72, C.74 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.52, H:C.55, H:H.72, H:C.74 ZN.14: 5 residues within 4Å: Chain I: C.52, H.54, C.55, H.72, C.74 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.52, I:C.55, I:H.72, I:C.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liemann, S. et al., Structure of the reovirus membrane-penetration protein, Mu1, in a complex with is protector protein, Sigma3. Cell(Cambridge,Mass.) (2002)

Release Date

2002-02-06

Peptides

PROTEIN MU-1: ACE
PROTEIN MU-1: BDF
SIGMA 3 PROTEIN: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

H
H

I
I

PROTEIN MU-1

PROTEIN MU-1

SIGMA 3 PROTEIN

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